RNA id: TU37044


Basic Information

Item Value
RNA id TU37044
length 2247
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G29583
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 48295053 ~ 48297299 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttgattctCAAAAATGTAGACATCCACTGTTGCAAGGAATGCTcttagaaattaattttaaatgcaattcataGTTTACATACTTCATCATTtacaaaactacattttgatTACTAAAGTTTACATACTGATATGCAGATTAATTAAGGGCAGACATTTgcacaaatgttttcaaagaatTATGCAGCATCCCGTTTCACCCCAGCTTTCTGAATACTAACTTGTGTTAAAGCAGAGTcacattccattccattctatTCAATTACCTTTACAGAGTTCTAAACAGTACTTTGCAAACAAATACAGGTTTGCCAAGGAGCATGAGTTGAAGGGACTGtgggagtttttattttcaaggccaaaaaagtataattataataaataaacaaattaaacgcATGTATAgatatgatttgatttgaagtAATGTATCTCGGGGTTTACCGTTAAAACGATGACCAGAACTGTAATCCATGCTTATCTCACACAATATACACATCCTTGACAAACATGGGGCTTCATCCCAATAGATTTGAAtaccattttattaaaaaccaTTAAACTGTGCAGctttttgcacacacacacacaaagtttgttatattatgtaataaaataataaacaaatcattatgttctaataataaaattaaataaaattaaagctCAAATACACTGCCATTCCCAttcttttattaattcattgCCAACAACTTTCACCCAAACCCCATTTCTCTGGTTATCAGTTATGCTAACCATAAAACagattttacagtttttgaTGTTAAACTCTTTAATCATTTAATCCCTGACATGCAATCATGTCTGAAGAACTGAGAATCCAGAAAAAAAGtttctaaaaatgcatttctttataatacaatttcaaactTTAGAGCAAAAAGCAAAGTACAGGGAAGCAGACTCTGCTGTGAACAATACACAGACATTTGTGAAACTCTATTTAATGTCATGCTTTAAGCTGCTACAATAGCTGgagtttatatttattgatgatgCCGATATGCAGCATTGGGGCCTAAAATGCACCCTGTCCCGATAGGTCTCTTTTGCAGTTGATTTGCTGAAGGAAGTATAACATCACTGTTATAGAGTCTTAGCAGAACTAGAGTTTAAAGCAAAGATTGGAGCgtgcacttttttgttttgtttagactGGGAACAGCAGTTTTTAACCGTTCCAAAATGTACTTAACTCTGGGATTTTAATCACTTTTACAGTTGATTAAAACATTCTAGCACAATCACAGTTATGCATTTGGGGACACCATAATGGAAAAAGGACAGAGTTGAGAGGGAGATTTGGTATTTCTGGTACACAAAGAACTTGGCATTCATTCACAGATACCATAATTCTCGTAACTGTCCCATTGCAGAGAAAAACCTCTTACCCTTGATTCAGAAATATGCAGGGCTTCATAACCATACATACAATGGTGGCAGACGTAATAGCTTAATCAGCTAACCACtggtgatttgttttctccttctATACACTGACAGGTCACATTTATAATAGTGCCGAGTATGTTACAGGTGGGAGGAACTCGCAATCACACATCACTGACATGCTGGTGCTCAGCAACAACTATTTCAGGAGCCCACTGCACAACTGGAAAGTGAAGTGAGAAATCACTAGCCTGCTAAACTGTAGAGCAATTGATATTATTACTGAACATTTGCCAGGACTAAGGGGTTGTAATagtttgtacatttgtaaacaCAAAGATATTCTATGTATTGtgctctgcaaaacaaaaacaaacatacatttacaaatgtatgcaaACTACCTAACCTGAAATCTGAAGTACTGTACATTTCTTggaagtgtgttttgtgttttttatcttCTCAGAATGTGAAATCTGACCAATCTTTTCCCCAGTCAAACATTAAAATGGACTACAATATTGCGGATCAGGGATTCTGGTCTATTTTGCAAAGATACAAATGTTATAGTGGTTGAATTCCATAACAAACCAAAACTTCAGGAAGAATTAAATgctgtacagtacaatataggGAATAGTACATCATACAATAATCCAAACAGCGGTATGAAAACTGCATTATTAGGTGAGGTAAATGTGAAACTTAAGCTGCACCTTAAAGTCTAAAATTAAAACCCAGGAGTACAACTGGTATTATATGCAGTCACTAGTACGGTTTTGTTTGATTAGTCTATTTAGTTTCCCTGTAACAAAAGACATTTGGAATAGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36985 lncRNA downstream 264140 48027717 ~ 48030913 (-) True G29530
TU36976 lncRNA downstream 282098 48008657 ~ 48012955 (-) True G29521
TU36921 lncRNA downstream 376591 47666642 ~ 47918462 (-) False AMCG00008245
TU36925 lncRNA downstream 376591 47666642 ~ 47918462 (-) False AMCG00008245
TU36924 lncRNA downstream 404370 47713934 ~ 47890683 (-) False AMCG00008245
TU37057 lncRNA upstream 34809 48332108 ~ 48332942 (-) True G29595
TU37077 lncRNA upstream 117704 48415003 ~ 48418903 (-) False AMCG00008255
TU37078 lncRNA upstream 117704 48415003 ~ 48418903 (-) False AMCG00008255
TU37079 lncRNA upstream 117704 48415003 ~ 48418903 (-) True AMCG00008255
TU37126 lncRNA upstream 268368 48565667 ~ 48653934 (-) True G29656
AMCG00008256 mRNA downstream 3610 48202621 ~ 48291443 (-) True AMCG00008256
AMCG00008254 mRNA downstream 92591 48042673 ~ 48202462 (-) True AMCG00008254
AMCG00008245 mRNA downstream 376941 47916071 ~ 47918112 (-) False AMCG00008245
AMCG00008244 mRNA downstream 407754 47882297 ~ 47887299 (-) True AMCG00008244
AMCG00008240 mRNA downstream 502532 47783301 ~ 47792521 (-) True AMCG00008240
AMCG00008255 mRNA upstream 113786 48411085 ~ 48418933 (-) False AMCG00008255
AMCG00008258 mRNA upstream 187096 48484395 ~ 48643942 (-) True AMCG00008258
AMCG00008257 mRNA upstream 377229 48674528 ~ 48697834 (-) True AMCG00008257
AMCG00008260 mRNA upstream 540849 48838148 ~ 48839345 (-) True AMCG00008260
AMCG00008259 mRNA upstream 562856 48860155 ~ 48861604 (-) True AMCG00008259
TU37036 other downstream 11840 48281342 ~ 48283213 (-) False AMCG00008256
TU36999 other downstream 170371 48123925 ~ 48124682 (-) True G29544
TU36922 other downstream 376591 47713934 ~ 47918462 (-) True AMCG00008245
TU36785 other downstream 1813155 46480946 ~ 46481898 (-) True G29361
TU36715 other downstream 2240707 46050695 ~ 46054346 (-) True G29301
TU37454 other upstream 1498672 49795971 ~ 49900951 (-) True G29928
TU37508 other upstream 1756526 50053825 ~ 50054102 (-) True G29974
TU37591 other upstream 1976439 50273738 ~ 50274183 (-) True G30054
TU37623 other upstream 2226688 50523987 ~ 50528036 (-) True AMCG00008298

Expression Profile