RNA id: TU37192



Basic Information


Item Value
RNA id TU37192
length 1018
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G29717
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 48924113 ~ 48940099 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


cttttttttttatatatatatattttttaattataatttgtttttttactttcatgccctctgcaacaaaaacaaaatgcataagcCAGTTTTTCTTCTGCTAAAATTAGAAGAAACAGGCCATGGTGTAAACAAGGTTAAAgtcataaaagaaaaactaaaggagaaatggaaaaactaagaataaattgaataaaCCTAATTCTTCCTGTGCAACGTTATTGCGTAGCGTTTCCATTGTTGCATCCTGAATTATAACTCGCCTCTCCTCGTTTGTTCTCCTTTTGATATTCTTTTCACATTACAGCTCTTGAGATGGAAGTTTCTTCACAGTTGGAAGATCATCACAGAGTCCCTTTTTCACCTTGGTAAAATGTGGGATCCTGGGGTTTTGAGTAAACATTTTAAGCGACGTCTCAACCAAACGCAGGTATTGCTCGGATCGCTTGTTCCCATGGCTCATTTTCTGGGCTAGGCCGTTCCTCTGCAACACGCATTCCTCCAACTGCACCACGTTTTCGTGCCGCCTCTCCAGACTGGCCAAGGCCCAGAACTCAGCCAGAGCGAGCTCCACATTTTCGGGAGCGTCACAACGAAGTTTCTTAACTGCTACCCTTGCCCCCGACCTCCGAGCAATGGCTTCGTACACCACGCCATAGCTGCCCCTTCCAACCTCCCGCAGCAGGCTGTAGCGCGGCGCGAGTACTTTCCGCCCCGGTTTCTCGCTTTTTGCAATGCTGTTGGAGAAATAATCTTCCTCCATCGGGACTGCATTGCCCTCACCTTCCCCCACTGTCAACGATTTCAAAACTTTCCCCACTTCCCTTTTCAACTTCGCATTCGGAGCCCCATCTCTCCTGCCAGCACGCACACTTTTTGTCCTTCTCCTCCCCCCGTCACCTGTATCCATGGGTTTCTTTTCGTTAAACGTGAATGTGCATGGAAATTCGGTTTGCCTCTCCTCATTACTTTTTTCCAAAGATGGGGATGATTTACAATGCAAGGGTTGACTTTCCCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU37166 lncRNA downstream 81500 48842351 ~ 48842613 (-) True G29695
TU37165 lncRNA downstream 90291 48833539 ~ 48833822 (-) True G29694
TU37146 lncRNA downstream 161816 48761972 ~ 48762297 (-) True G29676
TU37143 lncRNA downstream 191522 48732260 ~ 48732591 (-) True G29673
TU37126 lncRNA downstream 270179 48565667 ~ 48653934 (-) True G29656
TU37201 lncRNA upstream 26939 48967038 ~ 48967343 (-) True G29723
TU37266 lncRNA upstream 242669 49182768 ~ 49253244 (-) True AMCG00008264
TU37301 lncRNA upstream 388474 49328573 ~ 49328840 (-) True G29806
TU37324 lncRNA upstream 460070 49400169 ~ 49400479 (-) True G29825
TU37325 lncRNA upstream 460551 49400650 ~ 49400872 (-) True G29826
AMCG00008259 mRNA downstream 62509 48860155 ~ 48861604 (-) True AMCG00008259
AMCG00008260 mRNA downstream 84768 48838148 ~ 48839345 (-) True AMCG00008260
AMCG00008257 mRNA downstream 226279 48674528 ~ 48697834 (-) True AMCG00008257
AMCG00008258 mRNA downstream 280171 48484395 ~ 48643942 (-) True AMCG00008258
AMCG00008255 mRNA downstream 505180 48411085 ~ 48418933 (-) False AMCG00008255
AMCG00008261 mRNA upstream 204074 49144173 ~ 49169545 (-) True AMCG00008261
AMCG00008264 mRNA upstream 235626 49175725 ~ 49251899 (-) False AMCG00008264
AMCG00008265 mRNA upstream 329521 49269620 ~ 49280998 (-) True AMCG00008265
AMCG00008266 mRNA upstream 359434 49299533 ~ 49324003 (-) True AMCG00008266
AMCG00008267 mRNA upstream 405389 49345488 ~ 49361511 (-) True AMCG00008267
TU37036 other downstream 640900 48281342 ~ 48283213 (-) False AMCG00008256
TU36999 other downstream 799431 48123925 ~ 48124682 (-) True G29544
TU36922 other downstream 1005651 47713934 ~ 47918462 (-) True AMCG00008245
TU36785 other downstream 2442215 46480946 ~ 46481898 (-) True G29361
TU36715 other downstream 2869767 46050695 ~ 46054346 (-) True G29301
TU37454 other upstream 855872 49795971 ~ 49900951 (-) True G29928
TU37508 other upstream 1113726 50053825 ~ 50054102 (-) True G29974
TU37591 other upstream 1333639 50273738 ~ 50274183 (-) True G30054
TU37623 other upstream 1583888 50523987 ~ 50528036 (-) True AMCG00008298

Expression Profile