RNA id: TU37301


Basic Information

Item Value
RNA id TU37301
length 268
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G29806
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 49328573 ~ 49328840 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtcgatgcctttcatgattttgaagacttggatcaagtccccacgtagtctcctctgttccagggtgaaaaggttcagttccctcagtctctcatagtaggactttcccttcagacctggaataagtctggttgctctcctctgaactgcctctaaagcagcaatatccttcttgaagtgtggtgcccagaactgcacacagtattccagatgaggtctaactagcgcattgtacagtcttaacattacttcccttgttctaaattct

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0017001 antibiotic catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37266 lncRNA downstream 75329 49182768 ~ 49253244 (-) True AMCG00008264
TU37201 lncRNA downstream 361230 48967038 ~ 48967343 (-) True G29723
TU37192 lncRNA downstream 388474 48924113 ~ 48940099 (-) True G29717
TU37166 lncRNA downstream 485960 48842351 ~ 48842613 (-) True G29695
TU37165 lncRNA downstream 494751 48833539 ~ 48833822 (-) True G29694
TU37324 lncRNA upstream 71329 49400169 ~ 49400479 (-) True G29825
TU37325 lncRNA upstream 71810 49400650 ~ 49400872 (-) True G29826
TU37326 lncRNA upstream 73209 49402049 ~ 49402258 (-) True G29827
TU37338 lncRNA upstream 82516 49411356 ~ 49417214 (-) True G29834
TU37418 lncRNA upstream 186644 49515484 ~ 49588805 (-) True G29899
AMCG00008266 mRNA downstream 4570 49299533 ~ 49324003 (-) True AMCG00008266
AMCG00008265 mRNA downstream 47575 49269620 ~ 49280998 (-) True AMCG00008265
AMCG00008264 mRNA downstream 76674 49175725 ~ 49251899 (-) False AMCG00008264
AMCG00008261 mRNA downstream 159028 49144173 ~ 49169545 (-) True AMCG00008261
AMCG00008259 mRNA downstream 466969 48860155 ~ 48861604 (-) True AMCG00008259
AMCG00008267 mRNA upstream 16648 49345488 ~ 49361511 (-) True AMCG00008267
AMCG00008269 mRNA upstream 84552 49413392 ~ 49415125 (-) True AMCG00008269
AMCG00008268 mRNA upstream 149493 49478333 ~ 49479077 (-) True AMCG00008268
AMCG00008273 mRNA upstream 168560 49497400 ~ 49537179 (-) False AMCG00008273
AMCG00008274 mRNA upstream 324730 49653570 ~ 49661750 (-) True AMCG00008274
TU37036 other downstream 1045360 48281342 ~ 48283213 (-) False AMCG00008256
TU36999 other downstream 1203891 48123925 ~ 48124682 (-) True G29544
TU36922 other downstream 1410111 47713934 ~ 47918462 (-) True AMCG00008245
TU36785 other downstream 2846675 46480946 ~ 46481898 (-) True G29361
TU36715 other downstream 3274227 46050695 ~ 46054346 (-) True G29301
TU37454 other upstream 467131 49795971 ~ 49900951 (-) True G29928
TU37508 other upstream 724985 50053825 ~ 50054102 (-) True G29974
TU37591 other upstream 944898 50273738 ~ 50274183 (-) True G30054
TU37623 other upstream 1195147 50523987 ~ 50528036 (-) True AMCG00008298

Expression Profile