RNA id: TU37418


Basic Information

Item Value
RNA id TU37418
length 559
lncRNA type sense_over
GC content 0.40
exon number 2
gene id G29899
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 49515484 ~ 49588805 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aGTAGTAGTGTTGCAAACCTGTTACTTAAGAGAactgtgtaaaagccttattaatcaccttataattgttcattctacTCAGATAACATTTCACTccagtaaattatatatatatacatacactcacctaaaggattattaggaacacctgttcaatttctcattaatgcaattatctaaccaaccaatcacatggcagttgcttcaatgcatttaggggtgtggtcctggtcaagacaatctcctgaactccaaactgaatgtctgaatgggaaagaaaggtgatttaagcaattttgagtgtggcatggttgttggtgccagacgggccagtctgagtatttcacaatctgctcagttactgggattttcacgctcaaccatttctagggtttacaaagaatggtgtgaaaagggaaaaacatccagtatgcggcagtcctgtgggcgaaaatgccttgttgatgctagaggtcagaggagaatcagcttgaatcagtcggcccatagaagagcaactttgactgaaataaccactcgttacaaccgaggtatgcag

Function

GO:

id name namespace
GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37338 lncRNA downstream 98270 49411356 ~ 49417214 (-) True G29834
TU37326 lncRNA downstream 113226 49402049 ~ 49402258 (-) True G29827
TU37325 lncRNA downstream 114612 49400650 ~ 49400872 (-) True G29826
TU37324 lncRNA downstream 115005 49400169 ~ 49400479 (-) True G29825
TU37301 lncRNA downstream 186644 49328573 ~ 49328840 (-) True G29806
TU37426 lncRNA upstream 3473 49592278 ~ 49621960 (-) True G29904
TU37432 lncRNA upstream 21318 49610123 ~ 49614420 (-) True G29908
TU37450 lncRNA upstream 197526 49786331 ~ 49787892 (-) True G29926
TU37452 lncRNA upstream 207166 49795971 ~ 49905089 (-) False G29928
TU37489 lncRNA upstream 385621 49974426 ~ 49974646 (-) True G29957
AMCG00008268 mRNA downstream 36407 49478333 ~ 49479077 (-) True AMCG00008268
AMCG00008269 mRNA downstream 100359 49413392 ~ 49415125 (-) True AMCG00008269
AMCG00008267 mRNA downstream 153973 49345488 ~ 49361511 (-) True AMCG00008267
AMCG00008266 mRNA downstream 191481 49299533 ~ 49324003 (-) True AMCG00008266
AMCG00008265 mRNA downstream 234486 49269620 ~ 49280998 (-) True AMCG00008265
AMCG00008274 mRNA upstream 64765 49653570 ~ 49661750 (-) True AMCG00008274
AMCG00008275 mRNA upstream 121061 49709866 ~ 49711609 (-) True AMCG00008275
AMCG00008277 mRNA upstream 150250 49739055 ~ 49752628 (-) True AMCG00008277
AMCG00008276 mRNA upstream 184309 49773114 ~ 49775968 (-) True AMCG00008276
AMCG00008278 mRNA upstream 249391 49838196 ~ 49840087 (-) True AMCG00008278
TU37036 other downstream 1232271 48281342 ~ 48283213 (-) False AMCG00008256
TU36999 other downstream 1390802 48123925 ~ 48124682 (-) True G29544
TU36922 other downstream 1597022 47713934 ~ 47918462 (-) True AMCG00008245
TU36785 other downstream 3033586 46480946 ~ 46481898 (-) True G29361
TU36715 other downstream 3461138 46050695 ~ 46054346 (-) True G29301
TU37454 other upstream 207166 49795971 ~ 49900951 (-) True G29928
TU37508 other upstream 465020 50053825 ~ 50054102 (-) True G29974
TU37591 other upstream 684933 50273738 ~ 50274183 (-) True G30054
TU37623 other upstream 935182 50523987 ~ 50528036 (-) True AMCG00008298

Expression Profile