RNA id: TU37454


Basic Information

Item Value
RNA id TU37454
length 2442
RNA type TUCP
GC content 0.42
exon number 2
gene id G29928
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 49795971 ~ 49905089 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NaaacacagtattagtatggtgttcctaataatcctttaggtgagtgtaaatagtaataatacatattgataaatataacttGAATACATGTCTCATTCGAAACTAGGATcaggagaaagaacagctgttggGATGCAGAGCAATGTTAACCAAAGTTGAATAAGGTTTAAGAAAGTTGATGAGTTTTAGAGTTGATACGGCTTAAAAGGTATGACTTAATGTAACCTAAATAATTTAATGAGACATAGTCATGGCCagtttaaagtaataaaaactgTATGGAAATAGTCCTTTCGAAAACAGAAATACCCTATCAATTAGGAAGAGGGGTACAAGGGCAGTGACATTGTGTGTTCCTCTGCTCCCCCACTCGCCTTTCAGATAAGCAGCCTGAGatgactgtgagagagagagagagaaggcagagACTGTAACTATGTGTAAGGGTTCAAAACTTACTATAGAGCTAGAGTGTCATAAATGGTAATTTACACTGCTTGtattgataatgataataacattgATGTTGATACAGAAGAATAAGGCACATACTGGATGAAAAccactttataaataataataatctgagatgcactgtaaagcttcaggaaattgcaactggccactgcaccttccataagagagctcaaatatTTGCTAAAGCATTGGTTGCCTCACAGGCACCCCTTCCCTTGTTTGCCTGTCTGGAGCATGGTGTTGGCCACACGGGCAAAGGGGGGATGTATGCATCAgtcttttaaattggtttgccCCAGGTTTTAAAGTAACAGTTCAGCTATAATATAGAACTTGCCACATCTGTCATGCTCATAATCCTGGGAAGGGAGCTAAATTCATAAAATCATGCCTTTTGttaatatgcaaatagattgtgtttaaatgcctaaaatgttgtggttatgaatatatacttgtaataatgCATAGGTTTTCTAAATGGGTTGAAGCCTATCCCTGTAGGAAGGCTGAAGTAGTAGCATTAGCAAAAATACTGTTAACAGATGTCATATGTAGATTTGGCATTCCAGGGAAATTTCCAGTGACAGGGGCACTCACTTCACTGGGACAATAGTACAGGAACTATGCAAAGCCCTGCAAGTTAAGCAGCATTTTCACTGCCCCATCACTCTCAGTCAGCTGGAGCAATGGAGAGACAAAATGGAATATTAAAGAATAAGCTGGCTAAAATATGTGAACAAACAGGACTCGAATGTCCAGATGCCCTTCCTGTAGCCCTAATGATAATGAGATCGTCAGCAAATTGGAAAACTGGTCTTTCTACGCGTGAGATTATTATGGGATGACTTATGAGACTTCCCATCACTCCTCAATTGTCTGTAAGGGAAATGGACATCCACTTGATGGATGATgctatgttgtatttttttgtatgggACTAACACGTGCATTCGaagctgtccattcacaggTAAAAGCAGTCCAGACTGAACCAGCCCAGCAGGATTGTCACCCCTTCCAGCCAGGTGACTACGTGTACATCAAAGtacacaaaagaaaatcctcCCTACAGCCCAGGTGGACAGCGCCCTATCAAGTGCTACTGACCACCCACACCGGTGTGAAGTGCCAAGGAAAGACGACATGGATCCACTCCTCCCACTGCAAACTTGCCCATCAAAGTGATCAGCACAACTCTGGTGGAGACCAGAGGGATGCTCCACCTTTGCCTGGATCCTCTTCCTCATCGCCTGCGGGACCATCATCTGCGCCATAGTAACCTGGGAAGAGGGCGCCTTCAACTCCAAGCTGACAGGATCATCGCTGACTGGGGAAGCCAGTCCAGAAGAAGCTGACATCGTTGTCACCCTCCAGCTATCAGCACAGGGCCAGAACAGTGGCCCAAAAGGAGCAACAGGATGCACGGGTCCACAAATACTGGGTGACGTGCTAGTAACCTCTCCCCTTTCGCATATTGACATCACAGACACTAACATGTACACTGATAAAATACGACTGAGGATTCGACAGCGACAAGACAGCCACCTGACCAGAGGAAACGCCTACCTCCAACTGTCTTATCAGTTTAcaaaagacttgaatcaaaATGCTGGGTGTGTTCACATGTGCCCCATAATGCTGAGGGAGGCATTCCCATTATTCGGGTTCCCTTGACTGCGGAAGATAACTGTGCTATATTGACTACATCACCCCCGCCATGAGATCTCTTTCAAAACCCCTAAGGGCCATAACGTAATCAAAGAGATATCTCTGAAACTGAGCGTTTCTTTTCCATATTGATCTCCCCATATGGTGTTGGGTGCTCTATACAGGAGGTTAAGATACTGGCCTCAATCGTAGAGGAGATTAGTAATAAAACTGCAGAATCTATAGATGACAtaatgtagcgtaaggtacacttataaatttcaattaaagaagtgaatttatagtatcacctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37450 lncRNA downstream 8079 49786331 ~ 49787892 (-) True G29926
TU37426 lncRNA downstream 174011 49592278 ~ 49621960 (-) True G29904
TU37432 lncRNA downstream 181551 49610123 ~ 49614420 (-) True G29908
TU37418 lncRNA downstream 207166 49515484 ~ 49588805 (-) True G29899
TU37419 lncRNA downstream 207166 49585886 ~ 49588805 (-) False G29899
TU37489 lncRNA upstream 73475 49974426 ~ 49974646 (-) True G29957
TU37522 lncRNA upstream 224689 50125640 ~ 50126131 (-) True G29987
TU37538 lncRNA upstream 284081 50185032 ~ 50185277 (-) True G30003
TU37586 lncRNA upstream 350759 50251710 ~ 50251922 (-) True G30049
TU37588 lncRNA upstream 359805 50260756 ~ 50261187 (-) True G30051
AMCG00008276 mRNA downstream 20003 49773114 ~ 49775968 (-) True AMCG00008276
AMCG00008277 mRNA downstream 43343 49739055 ~ 49752628 (-) True AMCG00008277
AMCG00008275 mRNA downstream 84362 49709866 ~ 49711609 (-) True AMCG00008275
AMCG00008274 mRNA downstream 134221 49653570 ~ 49661750 (-) True AMCG00008274
AMCG00008273 mRNA downstream 258792 49497400 ~ 49537179 (-) False AMCG00008273
AMCG00008282 mRNA upstream 46060 49947011 ~ 49987575 (-) True AMCG00008282
AMCG00008284 mRNA upstream 96009 49996960 ~ 50029620 (-) True AMCG00008284
AMCG00008285 mRNA upstream 186142 50087093 ~ 50089767 (-) True AMCG00008285
AMCG00008286 mRNA upstream 215082 50116033 ~ 50119306 (-) True AMCG00008286
AMCG00008287 mRNA upstream 246866 50147817 ~ 50155865 (-) True AMCG00008287
TU37036 other downstream 1512758 48281342 ~ 48283213 (-) False AMCG00008256
TU36999 other downstream 1671289 48123925 ~ 48124682 (-) True G29544
TU36922 other downstream 1877509 47713934 ~ 47918462 (-) True AMCG00008245
TU36785 other downstream 3314073 46480946 ~ 46481898 (-) True G29361
TU36715 other downstream 3741625 46050695 ~ 46054346 (-) True G29301
TU37508 other upstream 152874 50053825 ~ 50054102 (-) True G29974
TU37591 other upstream 372787 50273738 ~ 50274183 (-) True G30054
TU37623 other upstream 623036 50523987 ~ 50528036 (-) True AMCG00008298

Expression Profile