RNA id: TU37606


Basic Information

Item Value
RNA id TU37606
length 300
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G30065
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 50386260 ~ 50386559 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gcaggtgctgttacacgtggtctgccactgcgaggacaatcagctgtccttcctgtctccctgtagcgctgtcttaggtgtctcacagtacggacattgcaatttattgccctggccaaatctgcagtcctcatgcctccttgcagcatgccaaAGGCatgttcacgcagatgagcagggaccctgggcatctttcttttggtgtttttcagagtcattagaaaggtctctttagtgtcctaagtttttataattgtgaccttaattgcctaccgtctgtaagctgttagtgtcttaacg

Function

GO:

id name namespace
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006814 sodium ion transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37601 lncRNA downstream 29912 50353895 ~ 50356348 (-) True G30061
TU37596 lncRNA downstream 51655 50328270 ~ 50334605 (-) True G30059
TU37595 lncRNA downstream 71835 50314172 ~ 50314425 (-) True G30058
TU37590 lncRNA downstream 118825 50267076 ~ 50267435 (-) True G30053
TU37588 lncRNA downstream 125073 50260756 ~ 50261187 (-) True G30051
TU37618 lncRNA upstream 59160 50445719 ~ 50448970 (-) True G30070
TU37619 lncRNA upstream 60450 50447009 ~ 50448970 (-) False G30070
TU37636 lncRNA upstream 214898 50601457 ~ 50602050 (-) True G30086
TU37641 lncRNA upstream 227029 50613588 ~ 50613903 (-) True G30091
TU37644 lncRNA upstream 267660 50654219 ~ 50654513 (-) True G30094
AMCG00008289 mRNA downstream 72825 50308778 ~ 50313435 (-) True AMCG00008289
AMCG00008290 mRNA downstream 92897 50292332 ~ 50293363 (-) True AMCG00008290
AMCG00008287 mRNA downstream 230395 50147817 ~ 50155865 (-) True AMCG00008287
AMCG00008286 mRNA downstream 266954 50116033 ~ 50119306 (-) True AMCG00008286
AMCG00008285 mRNA downstream 296493 50087093 ~ 50089767 (-) True AMCG00008285
AMCG00008293 mRNA upstream 11180 50397739 ~ 50406216 (-) True AMCG00008293
AMCG00008295 mRNA upstream 64528 50451087 ~ 50518539 (-) True AMCG00008295
AMCG00008298 mRNA upstream 138761 50525320 ~ 50527378 (-) False AMCG00008298
AMCG00008297 mRNA upstream 163506 50550065 ~ 50559321 (-) True AMCG00008297
AMCG00008300 mRNA upstream 405517 50792076 ~ 50798319 (-) True AMCG00008300
TU37591 other downstream 112077 50273738 ~ 50274183 (-) True G30054
TU37508 other downstream 332158 50053825 ~ 50054102 (-) True G29974
TU37454 other downstream 485309 49795971 ~ 49900951 (-) True G29928
TU37036 other downstream 2103047 48281342 ~ 48283213 (-) False AMCG00008256
TU36999 other downstream 2261578 48123925 ~ 48124682 (-) True G29544
TU37623 other upstream 137428 50523987 ~ 50528036 (-) True AMCG00008298

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000066_00419486_00436877.mRNA True 2022 mRNA 0.46 4 CI01000066 418918 ~ 437551 (+)