RNA id: TU37618


Basic Information

Item Value
RNA id TU37618
length 3252
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G30070
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 50445719 ~ 50448970 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tATCTTTGTATAAAAATGTTGCCTTGAACATTGTACTACATAAAGCCATCcttcatttttacattgtgttgCAGGGGGGAGCTGTTACACATAATTCACTATTGAACCATGTCTGTTGTGCCGCGGATgcccaacaaacacacaacctgCCAAAACAAGCTATCCCCCTTCTTCTTTATAAAGTGCTCTGGTTTTAGCATGACGATACAGTTAAACATTTTCCGAAAGCCAATCTATTAGTATCACTGCAGGTAATAGCGTAAGTTTTTCCCTTTGTTACTAATGAGGAAAAAGGATAATTGTGTGGAGGACAATCTGTACTGTGCCCTTTAATCCCTTGAAAATCTGAGCATTTCTGGTATAGGCCTACAGGGCAATACTAGTAATCATCTTAAGTTTGCAGTAAAAATGGCGATGCAATTAGTCACTTAACAGAGACTTGCAATTCCTACATCCTTAAACTACCATCCAGTTTAGCGGAAGTGTCTGGTTGGACCCTTCTATTCTCTCTcgttatgaaattaaaatgatatcaCACAAACTAAGTAACTGGACTAATTAACCCCCTCCTTCctaaaatatatagcaataatCCAACAAGTGCTGAGTACtataataattttcaaataCTAATTCTAATACATTTAGAATGAAGTCCTGAAGTCCTTTGACCTGACATCATTTACTTCAAATGTAAGATGAATACTATAGGTACTAAACACGGCAATAGAGTTTACCGCACAAGAAAATCTCTTGGCAGAATATGGCCAATGGGCAGTAGGCAGctggattttgtatttttagaagtGTCACGAGTGGACTGTAGACCAGGGCAGGACAACTAGGGAAGGCCAAGGTGCAAGCTAACCAATTATTGTTGCCCAAAGTACACTACCTTCATATGTGCTTTAAAACCAGATTGAGAATAATTGCACAAATAAATATGGCaccctgaaggagctggaaGGTTTTTTGACTGTAAATCAagtctttattcttttttttttctgaagcagaATTGATCTTTTACTCTTTGACTCCTTCCACACATTTTCCTTGTCAAAGGACATGAATCCTTCCAAATGCAATTGCATTGCCTCAATACATTTGCCCACAGACTATTTGAGGACAAGCCTGCAATGATAAGCctcatcaaattaaattaaataaaatccttaGGAATTCTCCAAAAGGATGTTTGCTGTTATTTTCcgatttttttctttgcaaatttgtcattcttttccctaaacaaataaaaggatgGAACTTGGGTCATGTTCCCATACGTTTTCAAGTTTCTTGTTTACATCAGTATGGGTTACTGCTGAATATCCTGAAAAACATCTGGTTttagttatatttgtattatgatcAAATCCAAGCTGGTTTCTTCCCTATATAAATCCACAGAATTGACCTTTGTATAGTGAACAAAAAATATAGGAATCccttcttttatatattttttgatgcCCATAGTAACTGAGAACAAACTGCaacttattttcctttcaggtcttttaaatgttccttcgttttctggattttgttttatatcttgaaataaaggctcaaaataaagtattgttGACCATTATGTGTTAGGTAGTACATAAGTAGGAAAGCCTAACAAAATTCGGAGAGCAATCATGCAGTTAATAAATTTACCAGAAGTGTTTCTTTCCGACACTCCTTCCTCAGACATATTACTCATctacaaactgaaaataaacgtttactttttaatattccAACAACTGTCTTGGAAACAATCATTCTACTGAAACTAATTGTTCTTGCTTTAGGCCCAGTAACTACACAAATTGAGTTTTCTGTCAGCCAGTACTGTTGAATATTGCAGTTACTTATGCTGTCCTTTACCGGATCACCCTAGGCAATTTTTTCTATActgttaaatacacatttgtcatAGTCTACACTTTTCATTAATAagttgcatattttttcattgattttaatttagttttagtttttaatcaaCACAGAAACCTCTAATTTCCATCATAAGGATCAGGATGTTTTAAAGTATCCTTTTTCCAATTTATGCCCACTTTATGCACTGTTTTCACATTATGATGGTAATAATCATAACAGAGTTCTGAGGAGACCTACAGAATTAACAGTATGTAGTGCATCTGTGTTAAAGGCTTGATTGTGGTATTATGCTAGTTAGATTGTTCTTCCCTGTGTCGAATCATCAAAGGCCATTCTGACCAGctgttaaacaataaatatatatatatatatatatatatatatatatatatgtctgacACTTTACTCTCAGACACATTACTCCTCTAGATCCTGCTCAGTCACAATACTTTTAATATGCAATAAAAATTGATCAGTTGCAAGATTTGTGTTGCTGTAAGCCGGATAATATGCTTGTATGCCATGCAGTCTTTTTCTTAAATCTGAGCTGTGTGAAGTCTTGGTCTTTCTTCATGCTAGGTTTGTAAGGAGCCCCCAGACTGGTGATCAGGGTTTATGGGgagaaaatacataacataacaaTACATGTGAAGACTGTATTGACACGTTGGTCATGGTTTATAAAAGGTGGTCAATTATTCAAGAACTATGTGTGTTTTCTGCTTCTAATCAGAGTTATAATACTGTAAAAGGTGTATGTCAGTCCATTTGGTTTTACAGCACCTGGAACAAGATGGTCCAGTATAGCACTGCCACAGCTTGATACTTTTTAGATATTTGTTGAtggtctgtttttgttattcagccttttgtatgtattcatattagGCAAGTTTAAAGTAGACTTTGTACAATTGAGGCCTGTGAACTCACACTACAGTTTGTGTGAACCGTAACCAGTCTTTCCAATCACCAGAGCAAAAGTAGGTGCGATCTCAGATTAAACTCGCACATGGGTGAACTATGACAGCCTTGAAAAAgtgatagatttattttatttttgtacttttagctactattttttgttttttgctgttaaCCCTGCATGTAAAATACTCAAGTCTTGTCCACAAGAGTAGCTGTGTTCAGTGAACATGGatgtattttcacaaaatattttaggTAGTAAAATCCTCTGATGCCCGAATCAGCCCTGTAAACACAGATTTGAATTTGGAGATGAGCAtgggaaaataaaagtgtaaaaatactCTGGGGATGTATTGACACGAGTTGACAGTTGTCATCCTtgcttttttcttaaaaacaaactatattctCTGCTGTTTTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37606 lncRNA downstream 59160 50386260 ~ 50386559 (-) True G30065
TU37601 lncRNA downstream 89371 50353895 ~ 50356348 (-) True G30061
TU37596 lncRNA downstream 111114 50328270 ~ 50334605 (-) True G30059
TU37595 lncRNA downstream 131294 50314172 ~ 50314425 (-) True G30058
TU37590 lncRNA downstream 178284 50267076 ~ 50267435 (-) True G30053
TU37636 lncRNA upstream 152487 50601457 ~ 50602050 (-) True G30086
TU37641 lncRNA upstream 164618 50613588 ~ 50613903 (-) True G30091
TU37644 lncRNA upstream 205249 50654219 ~ 50654513 (-) True G30094
TU37646 lncRNA upstream 210974 50659944 ~ 50660176 (-) True G30096
TU37660 lncRNA upstream 301451 50750421 ~ 50753174 (-) True G30108
AMCG00008293 mRNA downstream 39503 50397739 ~ 50406216 (-) True AMCG00008293
AMCG00008289 mRNA downstream 132284 50308778 ~ 50313435 (-) True AMCG00008289
AMCG00008290 mRNA downstream 152356 50292332 ~ 50293363 (-) True AMCG00008290
AMCG00008287 mRNA downstream 289854 50147817 ~ 50155865 (-) True AMCG00008287
AMCG00008286 mRNA downstream 326413 50116033 ~ 50119306 (-) True AMCG00008286
AMCG00008295 mRNA upstream 2117 50451087 ~ 50518539 (-) True AMCG00008295
AMCG00008298 mRNA upstream 76350 50525320 ~ 50527378 (-) False AMCG00008298
AMCG00008297 mRNA upstream 101095 50550065 ~ 50559321 (-) True AMCG00008297
AMCG00008300 mRNA upstream 343106 50792076 ~ 50798319 (-) True AMCG00008300
AMCG00008299 mRNA upstream 361409 50810379 ~ 50813806 (-) True AMCG00008299
TU37591 other downstream 171536 50273738 ~ 50274183 (-) True G30054
TU37508 other downstream 391617 50053825 ~ 50054102 (-) True G29974
TU37454 other downstream 544768 49795971 ~ 49900951 (-) True G29928
TU37036 other downstream 2162506 48281342 ~ 48283213 (-) False AMCG00008256
TU36999 other downstream 2321037 48123925 ~ 48124682 (-) True G29544
TU37623 other upstream 75017 50523987 ~ 50528036 (-) True AMCG00008298

Expression Profile