RNA id: TU37728


Basic Information

Item Value
RNA id TU37728
length 1475
RNA type TUCP
GC content 0.53
exon number 1
gene id G30166
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 51426581 ~ 51428055 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGCACCTTGCCCACCACTGGCCCCACTGGGGTTATACAGTGAGGCCAGGTCACTAGGGCTGTAGGATCGGAGGATATTGATGACTTTCCAGTCTGGTTCCATTCCGTTGGCGGATGTGGAGGAGATGGATTTGACCGAAGTCATCTTGGAAGGCGAGTTTCCCTGCGATGAGGTCATCGTGGCTCTCCCAGCAGACACCAGCTTGCCGTAGCTGTCCCCTCTCCGCACAGCGGTGCCCTCTGGAGGGTCCTGCTCACGGCTCATTGGGCCGGAGAGCTTGTGTCTCTTGCTGGAGGGCTCCCCGTAGTCCGCGTGGGGAGAGTGTCGGAACCGACTTGACAGACACGTCCTCGCCGTGTCACTGGGCCACACGGCCCCATTCCTGGTCTGTTGAACCCTGGATACTGGTCCTTCTCTGTCCACATAGTTCTGCTGTACGGACACCACAAAATTGTCCCTTTTGTTGTGTAAGTCCGAATCCCTGGACTTCTCCGTGTATTTAGCGGTGCCTGGCCTGCCCTCAGTCATGGACATCCGTCGACTGCTGCCTGGGACGTCCCCCACCCTGTAGCGTTGCTGTGTGTCCTGAGGGGCTCCTTTCCTGCCATGGGCTTCAGGGGAGTGCACCACTGCTTGAGAAGGCCGTGCAGGAGGAGCTCTCTCAGCTGCTTTGGCTGCCTGGTGAGTTGGAGATTTGGTCCGGCGAGCATGTCTCCTATAAAAAGGAGGCAAGGGAGCAACATCGTTACCCTCGAGCGCCGGTGGGCAGCCGGTGTACCGCTTCAGTTTGCGTCCAGCCAGTGTGCTTCTTAAGCCATTTTTCTTTGTAGCATCAGGTTTTTCTTTATGTACCAGTTTCTTGTGCATTAGAAGGACCTCTGGGTATAGAGTTTTAAAGACGCATAAAGGGCAGGTACTGGTGATTAATGCGCTCTTGGGAACTGAGGTAGCAGAAACCGAAAGGGACATCTTAAAGGACAAATTTAATGGCATCTCAAATGACTCTTCTTTCATCTCTTTTCCTTCCATCTTCAGATTGAGTGATAAGGCGTACTTTTTAAGTGCTTCATCACCCGAGCCTGAAGGATGCTCAGCCGCACCGGACAAGCTCTCACATTCTGTTTTGACGGTACTGCCCTGGGTACGTTGGCAGGGGTTCTTGATAACGGTCTTGCCGGAGATCAGATTATTTTGAGCGGTGACAGGAGACGCATGTTCGGGCCCCATGCTGGACACAGGCCATGGTTTGGATTGCTTTTCATCTTGGTTGCCGTCGGCATTTTTGGCTAATTCCTGAGAAGATTTATCCTTGGCAGGCAAAACATAGTCTGGAGTTGGTGACGCCGACACAATTTTAGCAGAAGTCTCAGCATCAGGGTGCTTGTCTTTATGACGTCTCTCCAAGTGATATCTTAGTGAGGTCTTCTGAGCTGCAGCATAATCACAGAATTCACATTTATATGGTTTTTCACct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37727 lncRNA upstream 1631 51424663 ~ 51424950 (+) True G30165
TU37726 lncRNA upstream 3043 51420647 ~ 51423538 (+) True G30164
TU37720 lncRNA upstream 46788 51379568 ~ 51379793 (+) True G30158
TU37703 lncRNA upstream 248198 51178179 ~ 51178383 (+) True G30146
TU37694 lncRNA upstream 357874 51068140 ~ 51068707 (+) True G30139
TU37731 lncRNA downstream 13298 51441353 ~ 51441568 (+) True G30169
TU37736 lncRNA downstream 36469 51464524 ~ 51466267 (+) True G30174
TU37760 lncRNA downstream 87420 51515475 ~ 51515731 (+) True G30195
TU37771 lncRNA downstream 136058 51564113 ~ 51571558 (+) True G30205
TU37772 lncRNA downstream 142667 51570722 ~ 51587545 (+) True G30206
AMCG00008304 mRNA upstream 89896 51333303 ~ 51336685 (+) True AMCG00008304
AMCG00008296 mRNA upstream 844398 50562754 ~ 50582183 (+) True AMCG00008296
AMCG00008294 mRNA upstream 966527 50451310 ~ 50460054 (+) True AMCG00008294
AMCG00008292 mRNA upstream 1022623 50366444 ~ 50403958 (+) True AMCG00008292
AMCG00008291 mRNA upstream 1066716 50358987 ~ 50359865 (+) True AMCG00008291
AMCG00008309 mRNA downstream 107415 51535470 ~ 51542896 (+) True AMCG00008309
AMCG00008308 mRNA downstream 124551 51552606 ~ 51560087 (+) True AMCG00008308
AMCG00008310 mRNA downstream 224309 51652364 ~ 51657000 (+) True AMCG00008310
AMCG00008316 mRNA downstream 838378 52266433 ~ 52311801 (+) True AMCG00008316
AMCG00008320 mRNA downstream 883834 52311889 ~ 52315183 (+) True AMCG00008320
TU37559 other upstream 1073787 50351527 ~ 50352794 (+) False AMCG00008288
TU37330 other upstream 2007835 49404856 ~ 49418746 (+) True AMCG00008271
TU37226 other upstream 2255564 49163816 ~ 49171017 (+) True AMCG00008263
TU36912 other upstream 3510324 47913868 ~ 47916257 (+) False AMCG00008241
TU36905 other upstream 3535898 47863569 ~ 47890683 (+) False AMCG00008242
TU37800 other downstream 672707 52100762 ~ 52101524 (+) True G30232
TU37873 other downstream 950274 52378329 ~ 52378776 (+) True G30299
TU37877 other downstream 953286 52381341 ~ 52382418 (+) True G30300

Expression Profile