RNA id: TU37800



Basic Information


Item Value
RNA id TU37800
length 763
RNA type TUCP
GC content 0.43
exon number 1
gene id G30232
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 52100762 ~ 52101524 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


actaaaataggtggctcagcagatacaatcttggcagcacaggctattcagagggacttagataatattcagttgtgggctgacacctggcaaatgaaattcaatgtggacaagtgcaaggtaattcatgcaggtaacaaaaatgtccactataattacactatgggaggtacagatctagatgaagtaacgcatgagaaagacctaggagtctatgtggactcctcaagcatccatccaagcaatgtggggaagcaataaaaaaggcaaatagaatgctagggtatattgtcaaaagtgtagaatttaaaacaagggaagtaatgttaagactgtacaatgcgctagttagacctcatctggaatactgtgtacagttctgggcaccacacttcaagaaggatattgctgctttagaggcagttcagaggagagcaaccagacttattccaggtctgaagggaatgtcctactcggagagactgagggaactgaaccttttcaccctggaacagaggagactatgtggggacttgatccaagtcttcaaaatcatgaaaggcatcgaccacatcaaaccagaggagctggtttacacagagagtagtcacaatctggaataaactacccagcgatgtggtagaagctgaaagtttgggaacatttaaaaatagtctggataggatccttggatcacttagatattaatgaacaccaaacgagcacgatgggtcgaatggccccctctcgtttgtaaactttc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU37787 lncRNA upstream 311615 51788910 ~ 51789147 (+) True G30219
TU37772 lncRNA upstream 513217 51570722 ~ 51587545 (+) True G30206
TU37771 lncRNA upstream 529204 51564113 ~ 51571558 (+) True G30205
TU37760 lncRNA upstream 585031 51515475 ~ 51515731 (+) True G30195
TU37736 lncRNA upstream 634495 51464524 ~ 51466267 (+) True G30174
TU37839 lncRNA downstream 187366 52288890 ~ 52289123 (+) True G30269
TU37853 lncRNA downstream 235520 52337044 ~ 52337267 (+) True G30283
TU37871 lncRNA downstream 275935 52377459 ~ 52377854 (+) True G30297
TU37999 lncRNA downstream 977483 53079007 ~ 53082898 (+) False AMCG00008334
TU38007 lncRNA downstream 1041656 53143180 ~ 53148134 (+) True AMCG00008335
AMCG00008310 mRNA upstream 443762 51652364 ~ 51657000 (+) True AMCG00008310
AMCG00008308 mRNA upstream 540675 51552606 ~ 51560087 (+) True AMCG00008308
AMCG00008309 mRNA upstream 557866 51535470 ~ 51542896 (+) True AMCG00008309
AMCG00008304 mRNA upstream 764077 51333303 ~ 51336685 (+) True AMCG00008304
AMCG00008296 mRNA upstream 1518579 50562754 ~ 50582183 (+) True AMCG00008296
AMCG00008316 mRNA downstream 164909 52266433 ~ 52311801 (+) True AMCG00008316
AMCG00008320 mRNA downstream 210365 52311889 ~ 52315183 (+) True AMCG00008320
AMCG00008315 mRNA downstream 270774 52372298 ~ 52376305 (+) True AMCG00008315
AMCG00008326 mRNA downstream 346425 52447949 ~ 52483301 (+) True AMCG00008326
AMCG00008328 mRNA downstream 435756 52537280 ~ 52551487 (+) True AMCG00008328
TU37728 other upstream 672707 51426581 ~ 51428055 (+) True G30166
TU37559 other upstream 1747968 50351527 ~ 50352794 (+) False AMCG00008288
TU37330 other upstream 2682016 49404856 ~ 49418746 (+) True AMCG00008271
TU37226 other upstream 2929745 49163816 ~ 49171017 (+) True AMCG00008263
TU36912 other upstream 4184505 47913868 ~ 47916257 (+) False AMCG00008241
TU37873 other downstream 276805 52378329 ~ 52378776 (+) True G30299
TU37877 other downstream 279817 52381341 ~ 52382418 (+) True G30300

Expression Profile