RNA id: TU38019


Basic Information

Item Value
RNA id TU38019
length 3273
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G30409
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 53079584 ~ 53082902 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTAGCAAATAAAAGGTTAAATTCGCAACAATACctagaacatttttttaaaactctttctgtacaatatttattttttatagaccACACACAACTacaaacatgaaacaatgtatgtacaataatgcataattagaggaaaataataataataataataaaaaagttttaagtACTGGACATGTCCTTTAATCAAAGCACATCCTATAAACTCTCAATGTGAGCGACCACTTGGTTATTGTCACACAACCAAACtgcaagttttattttgtaattccaGTAACACTGCCCATCTCTTTATACAGTTTATTGAATATGAAATGTCCTGAATATAAAAACTCTTGACATTAAGTCTGACCTTGAAGGAGGGGTATCGTAATCAGGAATGCACTGAATTAATACAGCTTTTATTTCCTCAGTAACTGAAAGACAGATGCCAAGTACTTCAAACATTGGACACACAGTTGAAACTCTGAAATACAAGTATGCATTAAAAagatcaaattaatttgtatgaaCAATGGAACCCTTATTATAttagtaagaaaaaaaaatagtattcatCAGTAGAAACccgaaaataattaaaaacaaaacccaaaaatgacaaatgataTGTACTGTAACAGCTAAACGTACATCTCCATTAATTCTACACAATTCTATTTCCTTCCTGCAGTACAAATCTTGGACATTTTCagcttccccccacccccttgttGTCAGTCCTCGGTCACAGTGTTAGCCAAAGAGTTTTATAAAGCAGTGTTGTGCATCAATTTCCTCGTTTAACCCAATTACAATAGCAGAGTGTAACAGCCTATGAGATCCTTTAATTCCATCAccacctaaaataacattgcagGCTAGTTCTGCCAATTTGAGTTAGCAGGAGCAGTGAAAGTAGTTCAGCTGTAATTTGCCTTTACAATGATTCCTGTTGTTAGAacaatgttttctgttaatATACAAGCACAGTATTCCACTGGAAAATTTAGTATCATATGCAGACAAACAATGGCTAAAGCCTGTTAATACATGTCTattcttgttttaaatacagGATCACTGTATGTGGAATTGATTTTCCTTCATTGCAGACTCAAACAGCATGATGCAAGCAAGAGTCCTCTTCATATGAACTTGCTACTTGACAGTCATTTCTTCCCCAGATtgaaatacagacacactctctccaTAATACTACAGATATCTGCATGATTGACACAGAGGAAACACTTAACTTCTGGTGTCTTCATGATAACAAGGCagaacacaaaattaaataaaactaaattaaataagcagCCGACATCTACTACACTGGGATGGCCAACCAGTAAACTGTAGATTGTCAATTGCAAATCATTAAATACTAAAATCAACCACTGTCAGATGAAGGCCACTAGTCTCTCAGAATCATAATCATCTTAATCATGATCTTTACATTATGAAAACTGGGGAGTAATTAAGTTAGGTTTGGAATGGTGTAGGAAGAACAAGAGCTACTCATACCAGAATGattcttcaaaaaataaaaaaaaataaaaaaaaatccacaaagcAGAGCATGACATCACCAACTGGCACTTTTCTGTTTCGTTTTGTTGGGTTTCAGTTCAACAGGGGAAAGTTCAACGAAGCACCATTCTTAAAATGGAACTCTGTGGGAACTGCAGATCTTctcatacaattaaaataaataaataatggcacttaaattaaattgcGCCCTCCACTTAATgactttaaatatatgtaaatattttaacttcCCTATTTTATTGTGCTCCACTTACAGTAACTTACAGTAATGTCCTGAGATGAGTATGAGAAGAAACGCAGTGACAATTATGTTCACTGCCAACCAGTAAGTACATCTTGCCAAGAAATAACTTAATGTGTCTGGATTGCACTTTGACCTTCTGAATATGAATATTGAAGACCCTACTAAGGTAAAATACACAGGTTACACAGGTCAGGAATCGTGCTGTATTCTAAATACTTGTGGAGATCGTGTGGAAAGAGCCAATCAGCTAAGGAGAGCAATACCACTTATGCTAAACGGATTACAGTCCTCAGTCAATCCTCAGACAATCCTTACAGGCCGCTATAGACAAAAAACTCTGCAATCACAGAATCCCACTGTAATATTTCACACGGCAACAACATTAAGGTTTAGTATCAAAAATGGACAGGTCTCAAACTTTTCCAAGAGGACCAGGTTATTAACAGGCACATTGGGGTCTTCTTTCCTGTCAGGTTTTGATAAGAGTTGCCAGAAAGATTTAGCTGACTTGGTCCCATtaactgcagtgttttaataGCTTCAAAAACAGCAATGGAACAATGTTTGCAGAGATGCCCAAACCACCAAAACCACACGTGACTGCGAGGAATGAAGATTGAATAGATGTCATCCTACAGTGATGTTTAGAAAcatacaatatactgtaaacGTGTATAATCCaaacaacaaaccaacaaaaaaaatgaaaaagaaaaaatgaaagaaaaaaagccctTGTAAGGCAGTATTCAGCAACAATTACATCTTAACCAATTACTTAAAagccttttattaattaaaaggcaCAAGTTCTGAAATTTCTTTAtgataaaactttttttgttaatgcacCAAAATGACCTAAAACTAAGAAGGCTGTCTTACGATTTATACAAATCAAAGgtacaatattattaaaaaaataataataagtttaacaacttgtttttttccctaaacTTTAATGCTTTCTTAAATTAGAACAATGCACTGTTTCCCTGCTTTAAGAGCATAAACTTACTATATAGATTTGTCCtcttaacacaaataaaatctcgttataaatatgtacaaaaacaTACGATCATTAAAACAACCTTGGACACGTTACACATTGTATACTTCATATCTCCCTTTGTTCACTTCAGTTTGTTTCCTGTGAAGAACATTATATGAACACTTCAACAGATCCGAGAATCGTTGTTATATTGTTATGCATGTTCAGCGTGTTATAACATGATATAATTcaagtaaaagaaaagaaaattaaattatatttacttacaattaaaaaaaataagaactaaCAAGATATTTAGAGTGCACCAGTGCCACAGAAGCTCTTGTATCACTATTTACATTGGTACAGACTGGCCTTATttctagaaaaataaagaaaagcaactAGAAAGAAAGGTTTGAACAGCTTTTTATAGTCATTAAAATAcctttgattattattgaattaCCTGCAGCTGTCTTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37882 lncRNA downstream 695017 52383473 ~ 52384567 (-) False AMCG00008325
TU37881 lncRNA downstream 697618 52381056 ~ 52381966 (-) False AMCG00008325
TU37855 lncRNA downstream 741218 52337483 ~ 52338366 (-) False AMCG00008318
TU37846 lncRNA downstream 753193 52326161 ~ 52326391 (-) True G30276
TU37845 lncRNA downstream 753547 52325705 ~ 52326037 (-) True G30275
TU38028 lncRNA upstream 62283 53145185 ~ 53148173 (-) True G30417
TU38106 lncRNA upstream 329092 53411994 ~ 53416431 (-) True G30479
TU38120 lncRNA upstream 348050 53430952 ~ 53434101 (-) True G30486
TU38148 lncRNA upstream 403939 53486841 ~ 53491107 (-) True G30505
TU38143 lncRNA upstream 416837 53499739 ~ 53506725 (-) True G30501
AMCG00008332 mRNA downstream 430022 52626515 ~ 52649562 (-) True AMCG00008332
AMCG00008331 mRNA downstream 495559 52572120 ~ 52584025 (-) True AMCG00008331
AMCG00008329 mRNA downstream 574262 52493341 ~ 52505322 (-) True AMCG00008329
AMCG00008324 mRNA downstream 653913 52388795 ~ 52425671 (-) True AMCG00008324
AMCG00008323 mRNA downstream 691214 52386360 ~ 52388370 (-) True AMCG00008323
AMCG00008340 mRNA upstream 193477 53276379 ~ 53281571 (-) True AMCG00008340
AMCG00008339 mRNA upstream 217574 53300476 ~ 53303340 (-) True AMCG00008339
AMCG00008341 mRNA upstream 222896 53305798 ~ 53357218 (-) True AMCG00008341
TU37623 other downstream 2551548 50523987 ~ 50528036 (-) True AMCG00008298
TU37591 other downstream 2805401 50273738 ~ 50274183 (-) True G30054
TU37508 other downstream 3025482 50053825 ~ 50054102 (-) True G29974
TU37454 other downstream 3178633 49795971 ~ 49900951 (-) True G29928
TU37036 other downstream 4796371 48281342 ~ 48283213 (-) False AMCG00008256

Expression Profile