RNA id: TU38106


Basic Information

Item Value
RNA id TU38106
length 2184
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G30479
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 53411994 ~ 53416431 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTAGTATCCTTTGGACTATGGAAAATGGCACACCTTTTCAAGCCTACAAAATGCAATGTGGCAACAGTATTAtcagttatttaaaaggaaTTAAGGTTACATCTGCATGGAATTATTCAGAGCTGTCATTTAGGTGCCTCCAGCAAGTGAAGCTGATAGTAAGTACAGTATATACGAAATGATGTACAGTAGAAGAGGTTTCTTAAGGCAAAGTTATAACCTATTCAAGTACTAGCACAACACGCTCTCTGCACAAATTAGGCGAAATAGGGCATACATCAATGAAGCTAAGCAGGTTGGCCCTTGTTAGTACTTGAAGGGAAGACTATGAAGGTTATAACCTATCTGGCcattatggaaaacaaatatggaaGTTGTATGGGTGggtatgtgtgcatgtgcagtCGTTGCACTGCTTATCCAACTTTAATACTTTTGTGGATCCTTTTTGTCAGGAAATGGAAAACCCGGAACTGAACTAGATTTAGCAACCATAGCATTTGAAttgactttatttttgtgtggtcTTTTCCAATCACCATACCTTGCAATCAGTTGTTTCTAGCAGAGAAATTTGACATTGTGGACTGACATTGCGGTTTGTCTGAAAACCATCAGTTTTGCTAGCGCTGAGTTTAACCTCTCTTGGGTAGTACAATCTCAAGCACAATCATCTAGATCAAGTCGAAATACTGTAAAAATTCCAACACTTACACAATCCTTCTTCGAGAATGTCAATGAGATATACCGTTGGGCAGGCACTAAGTCAGGatgttgtttcattttgtttttgtcttgttccCAGGAGACATGAATTTTGACAGAGTAAATTAATTCCTGGTAAATCAGCTGCAGCCTAGTGATGTTAATATGCCATCCTCTAGTTGACAGAACGAGGAACTATAGGACTCCATAGCACCAAATTCAGCCTCATCATGGTAACATTTCAGTCACGGTATATACAAACTGCAGGACTAAAAAGATGAGTTGTGGTGTGGTAGTAATGATGCATTTTGAGGGATGACTAGGTTAAGTACTAGCTTTCAAACTGCAATCCTGAATTAAGAAAAAGGTATTTACAGGGgtgggaggaaaaaaactaaaaacaagctTCAAGTCAGAATTCCATGTCAAGCAAACACTCTTGTACAGCATAATATCTTGCAGGTTTTGTTTCCTATGTCGTACTATCGTTACTGCAGTAataagatgaaaagaaaaagaaaaggaaaagaacaatTTTGGCTCAAGCAATTCTTGCACACGTACATACGATCAGTAAATATTTCGGAACAGACAATTATAATACACAATGACGGaaatggcagtttttttttttttgtttttttttttaacatgatgaAATTCAACCTTTAGATTTGCATTTGCCTGGGAGATTTATTGGTTGTGCTTCAATCTTGTTAAGTTGCCTACATAATTTCAAATACTTACGTATGCaagtacagaaattaaaatgatctggctttttattttattattttggtcaATTGTTTTTTGAATGCTACAAAGCAgtgaaaaatgattaaattgcaatctttttattatatatgtatgtgcacAGGCCACACAACTATGCTTTCTAGCAAAAGCAAGTCAAGATTACTGTTCTAGTTTTGCGAAAACCTTTAGGTCTGTTATACCATTCAAGTAGGGAATTTACCTACAACTATTGTTATTTAATACCATCGCAATAATTGTTGTGTGCCTTTTGTCAtcagatcatttaaataaaaatcaaggaAAACCTAAAGGCTGAATTTTGAAAGTAATATTAGAAGAGGAAAGGTTTCATAGGCAAAATACAGAGTAATGTTGTGAATGAACTAGTTGCAAGTATTCTAATTGTAAATTGATCTCCTATTGCACGAAGAATGGATTTTGTTTGTAGATGCAGAACAATGTATGACCTTTgatacagaaatattaaaaaaagttgcATTTTCCTAGCCAAAACTCTTCAGATGTGGAATTTCTTGATAAAGTCGTAGAAAATGTCTTCAACCAGAAAGTTCTGCTTGCAGCTCCTTGTTTCGGCGGACTTCAGCGGCATGCCTCTCCTAGTgagacacaggagagagagagtgagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaaagagagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38028 lncRNA downstream 263821 53145185 ~ 53148173 (-) True G30417
TU38019 lncRNA downstream 329092 53079584 ~ 53082902 (-) True G30409
TU37882 lncRNA downstream 1027427 52383473 ~ 52384567 (-) False AMCG00008325
TU37881 lncRNA downstream 1030028 52381056 ~ 52381966 (-) False AMCG00008325
TU37855 lncRNA downstream 1073628 52337483 ~ 52338366 (-) False AMCG00008318
TU38120 lncRNA upstream 14521 53430952 ~ 53434101 (-) True G30486
TU38148 lncRNA upstream 70410 53486841 ~ 53491107 (-) True G30505
TU38143 lncRNA upstream 83308 53499739 ~ 53506725 (-) True G30501
AMCG00008341 mRNA downstream 54776 53305798 ~ 53357218 (-) True AMCG00008341
AMCG00008339 mRNA downstream 108654 53300476 ~ 53303340 (-) True AMCG00008339
AMCG00008340 mRNA downstream 130423 53276379 ~ 53281571 (-) True AMCG00008340
AMCG00008332 mRNA downstream 762432 52626515 ~ 52649562 (-) True AMCG00008332
AMCG00008331 mRNA downstream 827969 52572120 ~ 52584025 (-) True AMCG00008331
TU37623 other downstream 2883958 50523987 ~ 50528036 (-) True AMCG00008298
TU37591 other downstream 3137811 50273738 ~ 50274183 (-) True G30054
TU37508 other downstream 3357892 50053825 ~ 50054102 (-) True G29974
TU37454 other downstream 3511043 49795971 ~ 49900951 (-) True G29928
TU37036 other downstream 5128781 48281342 ~ 48283213 (-) False AMCG00008256

Expression Profile