RNA id: AMCG00008362


Basic Information

Item Value
RNA id AMCG00008362
length 1093
RNA type mRNA
GC content 0.62
exon number 7
gene id AMCG00008362
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 55562 ~ 57874 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGCTGTTGGCTGTGCGTCACAATGACTCTCATCACATGACCGGTGAGTCTCCGCGGCGGCTGCACTTCCGACTTCAGCAGCTGGAGAGACAGCAGTTCCGGGTCGGCAGGGGTCACACGGAGGTTATCGCGCAGCCAGGTTACACGATGCTGATACGAagTGCGCTACAGGGAGGGCTGTCCTTGCTGAGGGGCACACGGCTGGTCCACCGCAGCGCCCCCTGGTCCAGCCCCTTGATCCCAATTGTGGTGGAGCAGACGgGCCGGGGGGAGCGCGCATACGACATTTACTCCAGGCTACTGAGAGAGAGGATCATCTGTGTGATGGGGCCAGTCAGTACCCTCACCTCGATCGACGACTCCGTGGCCAGCCTGGTGATCGCCCAGCTGCTTTTCCTGCAGTCTGAGAGCAACAACAAGCCCATCCACATGTACATCAACAGCCCGGGGGGTGTGGTGACTGCCGGCCTGGCCATTTACGACACCATGCAGTACATCCTGAACCCGGTCAGCACCTGGTGTGTCGGCCAGGCGGCCAGCATGGGCTCCCTGCTGCTGGCGGCCGGCACTGCGGGCATGAGGCACTCGCTGCCCAACTCCAGGATCATGGTGCACCAGCCCTCAGGGGGCGCAAGGGTGAGCGCTGCGGGgGCCAGGCCACCGACATTGCAATCCAGGCCGAGGAAATCCTGAAGCTGAAGAAACAGATCAACATCATCTACAGCAAACACACCGGCCAGCCTCTGGACACCATCGAGGGAGTGATGGAGAGGGACCGCTATATGAGCCCAATGGAGGCCCAGGACTTCGGGCTGATTGACAAGGTGCTGGTGCACCCCCCCCAGGCCGGGAGGGATGAGCCGGAGCTGCTGCACAAAGAGCCCCCCCCCAGCAGTGCACCTGGCTCCggcactgccccccccaccctgtcGGCCACCAGCACCCCCACGGCCTCCTCCACCAAGCCTGAACCCTGATCCCTGACCCCAccctgctctcctctctcctgtctgtccctccctctccctctctctctctgcagtgtagCACTTTGTTATTCCAAACACACAATAAAGTGAATTTGATACAA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K01358 clpP, CLPP; ATP-dependent Clp protease, protease subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60756 lncRNA downstream 36775 94649 ~ 97129 (+) True G48618
TU60776 lncRNA downstream 146607 204481 ~ 204901 (+) True G48631
TU60785 lncRNA downstream 164179 222053 ~ 222787 (+) True G48636
TU60784 lncRNA downstream 164205 222079 ~ 222787 (+) False G48636
TU60786 lncRNA downstream 167391 225265 ~ 225944 (+) True G48637
AMCG00008361 mRNA upstream 11787 41639 ~ 43775 (+) True AMCG00008361
AMCG00008363 mRNA downstream 2415 60289 ~ 70750 (+) True AMCG00008363
AMCG00008369 mRNA downstream 29964 87838 ~ 94561 (+) True AMCG00008369
AMCG00008368 mRNA downstream 39695 97569 ~ 111307 (+) True AMCG00008368
AMCG00008367 mRNA downstream 69182 127056 ~ 127729 (+) True AMCG00008367
AMCG00008375 mRNA downstream 95315 153189 ~ 204395 (+) True AMCG00008375
TU60757 other downstream 29443 87317 ~ 92880 (+) False AMCG00008369
TU60768 other downstream 109084 166958 ~ 167498 (+) False AMCG00008375
TU60995 other downstream 492407 550281 ~ 551906 (+) True G48811
TU61033 other downstream 529406 587280 ~ 588446 (+) True G48846
TU61256 other downstream 818680 876554 ~ 879513 (+) True G49013

Expression Profile