RNA id: AMCG00008367


Basic Information

Item Value
RNA id AMCG00008367
length 396
RNA type mRNA
GC content 0.67
exon number 2
gene id AMCG00008367
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 127056 ~ 127729 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTCGGTTCGGAGACGAGGTGCCGTCCCGCTACGGCGGCGGACCCGGCCAGGGGGGCCCCGGGCGCGGGGGCAGCAGGCAGGGCGGCCCGCCCGGGGCGCAGCGGATGTACAAGCAGTCTATGGCCCAGCGAGCGCGGACGATGGCCCTGTACAACCCCATCCCGGTGCGCCAGAACTGCCTCACCGTCAACCGCTCTCTCTTCATCTTCAGCGAGGACAACATCGTGAGGAAATACGCCAAAAAGATCACAGAGTGGCCATATCCTTTCTCAAACCTGCACCCCTCCCTGTCCACCACCCCCCGACTGCAGgctgctgctgctggtgtgcGAATGCGGTGGGAGACGAGCTGGCCGGGCTCCGTCTCTCCGGTGGGCGGGTGGAGGGGGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60756 lncRNA upstream 29927 94649 ~ 97129 (+) True G48618
TU60776 lncRNA downstream 76752 204481 ~ 204901 (+) True G48631
TU60785 lncRNA downstream 94324 222053 ~ 222787 (+) True G48636
TU60784 lncRNA downstream 94350 222079 ~ 222787 (+) False G48636
TU60786 lncRNA downstream 97536 225265 ~ 225944 (+) True G48637
TU60796 lncRNA downstream 123578 251307 ~ 252482 (+) True G48647
AMCG00008368 mRNA upstream 15749 97569 ~ 111307 (+) True AMCG00008368
AMCG00008369 mRNA upstream 32495 87838 ~ 94561 (+) True AMCG00008369
AMCG00008363 mRNA upstream 56306 60289 ~ 70750 (+) True AMCG00008363
AMCG00008362 mRNA upstream 69182 55562 ~ 57874 (+) True AMCG00008362
AMCG00008361 mRNA upstream 83281 41639 ~ 43775 (+) True AMCG00008361
AMCG00008375 mRNA downstream 25460 153189 ~ 204395 (+) True AMCG00008375
AMCG00008371 mRNA downstream 86916 214645 ~ 218875 (+) True AMCG00008371
AMCG00008372 mRNA downstream 107166 234895 ~ 243054 (+) True AMCG00008372
AMCG00008374 mRNA downstream 125750 253479 ~ 256222 (+) True AMCG00008374
AMCG00008376 mRNA downstream 132595 260324 ~ 261908 (+) False AMCG00008376
TU60757 other upstream 34176 87317 ~ 92880 (+) False AMCG00008369
TU60768 other downstream 39229 166958 ~ 167498 (+) False AMCG00008375
TU60995 other downstream 422552 550281 ~ 551906 (+) True G48811
TU61033 other downstream 459551 587280 ~ 588446 (+) True G48846
TU61256 other downstream 748825 876554 ~ 879513 (+) True G49013
TU61359 other downstream 838109 965838 ~ 968583 (+) True AMCG00008423

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1275626 False 1901 TUCP 0.48 1 NC_048576.1 85034720 ~ 85036620 (-)
mexican tetra (Astyanax mexicanus) TU448928 False 1597 TUCP 0.52 3 NW_019172906.1 2074001 ~ 2075816 (-)