RNA id: AMCG00008372


Basic Information

Item Value
RNA id AMCG00008372
length 2199
RNA type mRNA
GC content 0.62
exon number 15
gene id AMCG00008372
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 234895 ~ 243054 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tctcgcCTGAACCCGACACGGACATTACATCTCGCGTTTTCTCATCCTCGTCTAGCCTCCTCGGAACGCAGAAAACAAGCAGGCTTCCGTAGTTGCAGTTCTGTAATGTCTGGGCCCATGTGGTAGAGACGGTGAGACGGGCGCTGCGCTACTCcattgaaataataacattactaGAGAacaactaaagaaaataaaataaatacaactacaCAACAACAACGACCCAGAAGCGGAGGAGAGGAATTCCGTGCCCCGCAGACCGTCAGCCCCGCACAGCCCGCTGCGCCGCCCGGgtgtgtgtgtcGCTGAATGCTTGCTGGCACTGCCTGGCTGAGCCGTGTCCTGCGAGTGTGCGTGTCCACTGCGCCTCGGTGTCCCCGGAGAGCCTGGACCGCAGGGGCCACAGCAGCCAGCGCGGCCCGTAGGCGCTTCATGGAGTCCAGCGCCGGCCCCCAGGGCAGCCCGGCTGCACCCACCCCCTCCGGATCAGAGGACAAGGTGGCAGACTCCGCCCCCTCCCAGCTAAACTCCACCACAGGCCCTGCCCTCCCCCCGCCGGGCCTGGGGGACAGTCCCGCCCCCTCGTCTGAAGCCGCACCTCCAACCAGCCGATTGGAGGATGTGCAGCCCGGCTCCTTCCCTCTGGACCAGGACACGCCCCtggaggctgtgctgctggcgGGGGAGACAGTGGTGCGGGAGGGCCGGGCGGTCATCGTGTTCCCCAGTGCCAACGAGGTTTTCTACAACCCTGTGCAGGAGTTCAACCGTGACCTGACcTGTGCAGTGGTCACAGAGTATGCACGGGAGCATCTGGCTGCCAAAGGGGTGTACGTGGTGGTGCCGGGGGAGGAGGGTCGCCTGGTCGAGGGTCTCCGGGTGCTGGAGGGCCTGGCTGCGTCAGGACTGCGCTCGGTGCGTTTTGGGCTGGAGGTCCCGGGGCTGCGCAGCATCACGGCCAATGACTGCTCCGCCCGCGCAGCCGCCCTGATCGCCCGCAACGCCCAGCTCAACCGACTGCAGGGGCTGCTGACCGCTAGCCAGCGTGATGCAAGCCCCGCCCCCTTCCTGGATGCTGCTGTGCAGGCCGTGAGCgaaggagggcTGCTGTGTGTGACGTGTACCGACATGGCAGTGATGGCGGGGAACAGTGGGGAGACCGTCAGTGTGGATTTCTACATCCGCGTGTTTGTGCGAGTGCACAGCGGCCAGGCGCGGGTCAAGAGCTCTGCCAGtaaGCAGGCCCTGTTCGTGGGGCGTGTGTTGGCCGCCGTGTCGGGGAACCCGTCTCGCTTCGGGACGTCCCGGCGCATCGAGGGCATGCTGAGCATGGTGACTGAGGAGCTGCAGGATGTTCCTCTGTACTACACCCTGGACAGTATGAGCAGCACCCTCCACTGCAACACCCCCTCTCTGCTACAGGCCAGGTCCGCTCTGCTCCATGCTGGGTACCGCGTGTCTCTGTCCCACGCCTGTAAGAACGCGCTGAAGACCGACGCCCCCCCCAGTGCACTCTGGGACATCATGAGGTGCTGGGAAAAACTGAACCCAGTGAAGAGGGAGAGACTGGCTGAGACGAGCCCCGCCTACCGCATCCTGTCCACGGAGCCCGTtctggaGGCGTGTTTCTCCGTCAGGGAGGATGCCAACCCTCAGTCTCGCCGGCGGCACCTCACTCGGTTCCAGGAGAACCCTCAGGCCAACTGGGGGCCCAAGGCGCGTGCCAAGGCAGGCGGGGGGGTTTCGGAGGAGTTGGAGGACCGCAGGAAGAAGCTGCAGAACAAGAGGAAGCAGCCGAGCGGGGACCGTGCGACACTCAAGAGCTTCCCCTGCAAGCGGTTCAAGCAGGGGACTTGCAATCGCGGAGAGAAGTGCAGCTATTCCCACGACAGCCAGCAGGGGCAGAGCGAGGCAGGCTGCACAGCCGAGTGACAGTCACACCTCCGCCTCACACAAGTGGGGGGTGCGTGcgagtgagagtgtgagagagagtgtgagagggAGTATGagagagcaaaagagagagagtgcgagAGTGGGAtagcgagtgtgtgtgtgtgagagagcgagagagcgcaTGCGCAGACAGTCCGGGGAGAGCATCCTGAATTCATTGgaacttcattttatttttatcctccTCATCATGCTGATCCTGAGTTATTTGTGTTgctcattgaaataaatgcagtggAA

Function

GO:

id name namespace
GO:0030488 tRNA methylation biological_process
GO:0004809 tRNA (guanine-N2-)-methyltransferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K00555 TRMT1, trm1; tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60786 lncRNA upstream 8951 225265 ~ 225944 (+) True G48637
TU60785 lncRNA upstream 12108 222053 ~ 222787 (+) True G48636
TU60784 lncRNA upstream 12108 222079 ~ 222787 (+) False G48636
TU60776 lncRNA upstream 29994 204481 ~ 204901 (+) True G48631
TU60756 lncRNA upstream 137766 94649 ~ 97129 (+) True G48618
TU60796 lncRNA downstream 8253 251307 ~ 252482 (+) True G48647
TU60881 lncRNA downstream 14528 257582 ~ 258264 (+) True G48716
TU60884 lncRNA downstream 17220 260274 ~ 263022 (+) True AMCG00008376
TU60887 lncRNA downstream 20966 264020 ~ 264390 (+) True G48720
TU60888 lncRNA downstream 23520 266574 ~ 266881 (+) True G48721
AMCG00008371 mRNA upstream 16020 214645 ~ 218875 (+) True AMCG00008371
AMCG00008375 mRNA upstream 30500 153189 ~ 204395 (+) True AMCG00008375
AMCG00008367 mRNA upstream 107166 127056 ~ 127729 (+) True AMCG00008367
AMCG00008368 mRNA upstream 123588 97569 ~ 111307 (+) True AMCG00008368
AMCG00008369 mRNA upstream 140334 87838 ~ 94561 (+) True AMCG00008369
AMCG00008374 mRNA downstream 10425 253479 ~ 256222 (+) True AMCG00008374
AMCG00008376 mRNA downstream 17270 260324 ~ 261908 (+) False AMCG00008376
AMCG00008373 mRNA downstream 26706 269760 ~ 273986 (+) True AMCG00008373
AMCG00008386 mRNA downstream 64932 307986 ~ 311984 (+) True AMCG00008386
AMCG00008384 mRNA downstream 84569 327623 ~ 340268 (+) True AMCG00008384
TU60768 other upstream 67397 166958 ~ 167498 (+) False AMCG00008375
TU60757 other upstream 142015 87317 ~ 92880 (+) False AMCG00008369
TU60995 other downstream 307227 550281 ~ 551906 (+) True G48811
TU61033 other downstream 344226 587280 ~ 588446 (+) True G48846
TU61256 other downstream 633500 876554 ~ 879513 (+) True G49013
TU61359 other downstream 722784 965838 ~ 968583 (+) True AMCG00008423
TU61499 other downstream 1079757 1322811 ~ 1324269 (+) True G49208

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00006956 False 2733 mRNA 0.46 16 NC_007122.7 31236001 ~ 31258356 (+)
grasscarp (Ctenopharyngodon idella) CI01000306_06281314_06288766.mRNA True 2756 mRNA 0.49 15 CI01000306 6281014 ~ 6289053 (+)