RNA id: AMCG00008374


Basic Information

Item Value
RNA id AMCG00008374
length 1294
RNA type mRNA
GC content 0.64
exon number 6
gene id AMCG00008374
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 253479 ~ 256222 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGCGGGGCCTGTCGAGCTTCCGGCGGAGCAGACCCgtgagGGGGGCCCCTGCGATTGCCATAGTGGGTTGCCTCAGCCTGGCCGTGGAGCTGAGGACGGGGCCGGAGCGGGAGGGGGCCGAGCTCGTGGACTTTGTGCGCGAATCCGTGGCCCACCTGACCTCCGCTCGGCCAACTGCGGTCAACATGGGCCGGGCCGCCGGCGAGCTGGTCGAGTTCACCGAGAGGGAGAGCCAGGAACGGAGCGGCCAGGAGCTGAAGGAGAGcgTGATTGGCTGGATCGAGGCCATGCTGGAGAGGGACGTCAGTGACAACAAGAAGCTGGGGAACTTCGGGGCGCAACACATCCTGTCGGGGGTGCCGCGCGGCCGCGTCACGCTGCTCACGCACTGCAACACCGGGGCGCTGGCCACCGCCGGCTATGGCACCGCGCTGGgtGTGGTGCGCTCTCTGCACGCACTGGGCCGGTTGGAGCGGGTTCTGTTCACAGAGACACGGCCGTACTGCCAGGGCGCCCGACTCACCGCCTACGAGCTCACGGCCGAGCGCATCCCCGCCACCCTGATTGCTGACAGCTGCGCTGCACTCGCCATGAGGGACCAGGGCGTCACGGCGGTGGTGGTGGGGGCGGACAGGGTCGTCGCCAACGGGGACACAGCCAACAAAGTGGGCACCTATCAGCTGGCCATCGCCGCTAAGCACCATGGCATCCCGTTCTACGTGGCGGCACCCAGCACGTCCTGTGACCTGAGCCTGGAGAGCGGGCGGCTCATCGAGATCGAGGAGAGGCCAGACAGCGAGCTCACGCACATCAACGGCCAGCCACTCGCCGCCCCGGgggtGGAAGTGTGGAACCCGGCGTTCGATGTGACCCCTCACCAGCTGATCACAGGTGGCATCATCACTGAGCTGGGCGTCTTCCTGCCCTCGGAGCTGCAGGCCGCCCTCACCGGCCGCCTCACTGCCCTGTAGATCCCCTGCTGGAGGGAGGCTGCACTGCAGCTGCGCTGATATCAACACACACCGATGCTCACAGTTATTAGAGTGATACACTCACACTGGTACACAACTGCCACACTCTGAAGCACAGGCACACACTGTCACCCACACACTctgaggcacacacacacacacacacacacacacactctggagtgcaggtacacacacacacacacacacacacacactttgtaacCCCTGTACACATGCAACCTTACACTTAAGCAGACACAAGTACTGTAACCCCTCAGTCTCCTCtggctgtgtgcagtgtgtgtgtgtgtgtggg

Function

GO:

id name namespace
GO:0019509 L-methionine salvage from methylthioadenosine biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046523 S-methyl-5-thioribose-1-phosphate isomerase activity molecular_function

KEGG:

id description
K08963 mtnA; methylthioribose-1-phosphate isomerase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60796 lncRNA upstream 997 251307 ~ 252482 (+) True G48647
TU60786 lncRNA upstream 27535 225265 ~ 225944 (+) True G48637
TU60785 lncRNA upstream 30692 222053 ~ 222787 (+) True G48636
TU60784 lncRNA upstream 30692 222079 ~ 222787 (+) False G48636
TU60776 lncRNA upstream 48578 204481 ~ 204901 (+) True G48631
TU60881 lncRNA downstream 1360 257582 ~ 258264 (+) True G48716
TU60884 lncRNA downstream 4052 260274 ~ 263022 (+) True AMCG00008376
TU60887 lncRNA downstream 7798 264020 ~ 264390 (+) True G48720
TU60888 lncRNA downstream 10352 266574 ~ 266881 (+) True G48721
TU60975 lncRNA downstream 171659 427881 ~ 488584 (+) True G48796
AMCG00008372 mRNA upstream 10425 234895 ~ 243054 (+) True AMCG00008372
AMCG00008371 mRNA upstream 34604 214645 ~ 218875 (+) True AMCG00008371
AMCG00008375 mRNA upstream 49084 153189 ~ 204395 (+) True AMCG00008375
AMCG00008367 mRNA upstream 125750 127056 ~ 127729 (+) True AMCG00008367
AMCG00008368 mRNA upstream 142172 97569 ~ 111307 (+) True AMCG00008368
AMCG00008376 mRNA downstream 4102 260324 ~ 261908 (+) False AMCG00008376
AMCG00008373 mRNA downstream 13538 269760 ~ 273986 (+) True AMCG00008373
AMCG00008386 mRNA downstream 51764 307986 ~ 311984 (+) True AMCG00008386
AMCG00008384 mRNA downstream 71401 327623 ~ 340268 (+) True AMCG00008384
AMCG00008389 mRNA downstream 85540 341762 ~ 344446 (+) True AMCG00008389
TU60768 other upstream 85981 166958 ~ 167498 (+) False AMCG00008375
TU60757 other upstream 160599 87317 ~ 92880 (+) False AMCG00008369
TU60995 other downstream 294059 550281 ~ 551906 (+) True G48811
TU61033 other downstream 331058 587280 ~ 588446 (+) True G48846
TU61256 other downstream 620332 876554 ~ 879513 (+) True G49013
TU61359 other downstream 709616 965838 ~ 968583 (+) True AMCG00008423
TU61499 other downstream 1066589 1322811 ~ 1324269 (+) True G49208

Expression Profile