RNA id: TU60884


Basic Information

Item Value
RNA id TU60884
length 1599
lncRNA type sense_over
GC content 0.52
exon number 4
gene id AMCG00008376
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 260274 ~ 263022 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGAAGAGCCTGCGTCTCCATGGTAACGCCGTGCTGTGCGTCGCCGCAGACGACCGCTACATCCTGTCTGGGAGTGAGGACCGCACCCTGGCCGTGTTCGACCGCCGGGCTGGCAGACTGCTGCACAAGATACAGCTGAGCTCATACCTGCTGTCCCTGAGCTACGGGCGTGAGGGGGCGGAGCTATGGGCAGGGGATAACCAGGGTCAGCTGCACGCTTTCTCCCCATCCTGCGGCTCCTTCCTGCCCCTGGGGCAGTTCTCTGTGGGGCACCGCGCCCTCGTCACCGGCGTGCACAGCTCCCCCGGCGCTCTGTACACCTGCTCCACCGACCGCACTGTCAAGgtGCACCTCCCCTGTGCCCCCCCCAGGACACTGTGCACACTACAGCACCACAATGTTATAAATGGGctcagTGTGGAGGGAGGGATGCTGGCGGCCGCTTCGGGGGACATGTCAGTGGAGGTGTGGAAGGTGGAGGAGTGAACGAGGGGCTGAGATGCAGAAAAGAAGGGATGAGCTCCAGATGAGAGAAGCCAGTTTCAGTCCTTTATTCTTCAGCTCTAAAACTCAACTAATTGCCATTCCTGTCCTGTGACGCCAGGCAGCCACTTCTCCGTGCCGCTGGTCTCGTATAACTGTGTCTAGCACTCTGGccggccccttggggccactcCTACCCCAGCCCTGGTCTGGAGACAGCCGGCACTGCGGTACTGACCCATTCCTGCAGTCCAGTCCCCTGCTGAAGACACACTAAGGGCTCATTCATACCAGAGGTTTGTTTCGTACTCAGTGTGGTTCGGTTCGTTTGGAGAAGAGTGTGAACACATTTCGATTGGCAAACGAACCGAACTGAACTGAGACACCGATATGACTGCTACAGTTTGTTTACATATTGGACCCATATATGGTTTGGTTGTATCAGATGACTGTCACATGTGTTAGACTACTGCATGTAGTGACTTTATTGCCGTCATATAGatttgttattgtacgcgtTATGTGGCCATTTCTTAtttgcactaatcatgtaaaatgtaaatatccggtgttttattaatacaaaactaacCAAGCTCCCTGTTTATTGCAATgtgatctgagtcctgagaaaacacagaagtgaacCACGAAAACGAACCCGAGTTTGTTTCCAAACGAACTGAGCACGTCTACACAAGGCCAGTGTGAGCGGCtgcacactgatacattgtttcacagcaaaCGAACCGAACCGATTTGGTTTCACAGGAACCCAGTGTGAACAGGGGGTCAGAGACTGATTTCTCAGAGGAACTCATCCCAGTTCAATGTTTACAGAACCATCAGATCTGATCAGTTGAGGCATGAAGGTGTGGCTTATGAACCCTGCCGGACTGACTGGGAAACACCGAGGGGCTCCTGCAGCTGAACacagactgaacacacacacacacagagtgaaTGCACACGCACATACtgaatacacaacacacaaacacaacacgcAGACTcaactgaacacacacacactctttaagaacataagaaagtttacaatcgagaggaggccattcgacccatcgtactcgtttggtgtccattaataactaagNNN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60881 lncRNA upstream 2010 257582 ~ 258264 (+) True G48716
TU60796 lncRNA upstream 7792 251307 ~ 252482 (+) True G48647
TU60786 lncRNA upstream 34330 225265 ~ 225944 (+) True G48637
TU60785 lncRNA upstream 37487 222053 ~ 222787 (+) True G48636
TU60784 lncRNA upstream 37487 222079 ~ 222787 (+) False G48636
TU60887 lncRNA downstream 998 264020 ~ 264390 (+) True G48720
TU60888 lncRNA downstream 3552 266574 ~ 266881 (+) True G48721
TU60975 lncRNA downstream 164859 427881 ~ 488584 (+) True G48796
TU60985 lncRNA downstream 175961 438983 ~ 444637 (+) True G48803
TU60988 lncRNA downstream 193627 456649 ~ 458299 (+) True G48806
AMCG00008374 mRNA upstream 4052 253479 ~ 256222 (+) True AMCG00008374
AMCG00008372 mRNA upstream 17220 234895 ~ 243054 (+) True AMCG00008372
AMCG00008371 mRNA upstream 41399 214645 ~ 218875 (+) True AMCG00008371
AMCG00008375 mRNA upstream 55879 153189 ~ 204395 (+) True AMCG00008375
AMCG00008367 mRNA upstream 132545 127056 ~ 127729 (+) True AMCG00008367
AMCG00008373 mRNA downstream 6738 269760 ~ 273986 (+) True AMCG00008373
AMCG00008386 mRNA downstream 44964 307986 ~ 311984 (+) True AMCG00008386
AMCG00008384 mRNA downstream 64601 327623 ~ 340268 (+) True AMCG00008384
AMCG00008389 mRNA downstream 78740 341762 ~ 344446 (+) True AMCG00008389
AMCG00008385 mRNA downstream 89544 352566 ~ 358341 (+) True AMCG00008385
TU60768 other upstream 92776 166958 ~ 167498 (+) False AMCG00008375
TU60757 other upstream 167394 87317 ~ 92880 (+) False AMCG00008369
TU60995 other downstream 287259 550281 ~ 551906 (+) True G48811
TU61033 other downstream 324258 587280 ~ 588446 (+) True G48846
TU61256 other downstream 613532 876554 ~ 879513 (+) True G49013
TU61359 other downstream 702816 965838 ~ 968583 (+) True AMCG00008423
TU61499 other downstream 1059789 1322811 ~ 1324269 (+) True G49208

Expression Profile