RNA id: AMCG00008384


Basic Information

Item Value
RNA id AMCG00008384
length 4945
RNA type mRNA
GC content 0.66
exon number 5
gene id AMCG00008384
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 327623 ~ 340268 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gacacgCATCCCGGCCCCATCGCTAGTGCGCAGGCGCGTCAGGCCAGCTGAGCCCGAGTTGGTATCGCAGCGACGCCCGGAGCCCACAGACCGTCCGCGGCCGCTTTTGTGTGAGAAGCAGCTCTGCAGGCTGGCAGACACGGCACGGCCACAGCACAGCCAGCGCCACCGACACACCGGACCTGCCCTCGCTGCCTGCCGCTGCACCGTTCTCTCCCCACCGCCAGCCCGGCGCAGAGAGCCCGGCGCGTCCCGTCCAGCGCAGGCCAGCCAGCCGTCCGCAGCACGAGGCTTACATCCCGGACCCACCCGTGACCAGCCCAGTGACCGACGACGCCGGAGCTGCTGGGGGAGATGAAGCCGGATGGGGTTGCCACGGCAGCTATGCAACCTACAGACGTTCTGGAGGCGGGGCCTGTCATCGAGGAGGCGGGGCCTGTCGACAAGACAGCACCTGTAGGGGAGCAGCCTCCAAAGGCAGAGACCCCGCCCCCCTCGGAGCAGCCAGTTGTCGCACAGCAGCCGACTGCAACAGAGACGGTGCCCTCTGAGGCCAAGGAGGGGAACAGCAAGCCCGCCACCCCTAAATCCAAGACAAAAGGCCCGGCCGCAGGTCCCGCCAAACCGAAGCCCGGTACCACTGTGGGGAAGACGGCCGCAGCCTCCCGACCTGGCACAGCCCAGAGCCGCACCCTGAACGGGGTCCAGAAGCCTCTGTCCAACGGGGTGGCCACCAAGAAAGCCAACCCCACTGCGTTGGAGAAGAAGAAGCCCTCCGCCGCCTCCACGGCCACCAAGAGACCTGGCAGCAGTGCACCCGCCTCCCCGGCCGGCACTGCCGCCAAGGCAGCCGACAGGAAGCCCGTGGGAGCCCCCCGCCCCGCCTCGGCTCCCGCACCCGGGACCAATGGGGTGAAGACTGGGGTGGCAGCGGCCCAGCCCAGCCGGAAGGTGCCTGGAGTCACCAACACTGCCAGGGTGCGGCCCAACACTGCCGgtcCCAGACCCAGCTCCACTGTGCCTTCCAAAAACACTGCAGCCGTGACCAAACCCGAGAGGCCAGCTGCTTCTAAGACAAGGCCTGCGACCGGCACAGCTGCCCCTCCACGCTCTGTTCCCACTGCGGCTGCATCCAAGCCCACGGCGTCCTCCAGCCGGCCGCCCTCCTCCAGGCCCAGTGCGGCGGCGGCCCCTGGTGGCCGGAGTGCAGCATTGCAGCCCAACAAGAGTGCCACAGCCCCAGCCAAGAAAGATGTCGTCAGCAAGCCAGCGCCAGTGCCCAGGAAACCCGCTGCCGCCACCGCCCCCATCACTAAATGCAACACCACCGCCCCAGCCAAGACAGCCAAACCGGAGCGGACCCGACCTGGTGGTGCGGTCCGGCTTGCGGCTGACCCGGCAAAACGTCCCACCACTGCCACCACGGCCGCCGGGACCAAGACCGGCACCACAGACAAGCCGGCCCGCCCCAAGCCCTGTCCCCCCTCCGCCGCCAGCCCCCGTGCCCCCCCCGGCCGCGCCACCCTCTCCAAGACCACCACGCCCAGTCCGCGCAAACCGGTGGGCAGCAGCGCCCCCATGCCAGTGCGCCGCGCCCCCAAACCCACACAGACCGTCCTGCCACTGGGCGCCGGCGGGCAGCTGGCCCAGAAAACAGAGTTGGCAAAGTCTGACGCAGGCGATGCTGCTGCTGTCGCCCCAGGACCAGAAGCAGAACCCGCCCATGTCCCAGAAGACCTTCAGTTGCCCTCAGTTACCCCTACCCCGGCCGATGTGACTCCTGAGGCTGAACCAGCACGGACCCCGGAAGCCCCCCAGGCCCCAGAGATGGACACGCCTCAGATTGATGCGATTACATCATCTCCTGCCCTCGCAGgcccgccccccccaccactgGTGCCGGAGGGAGCAGTGGATACAGAGACCCCAACCGCCCCAGGACCCTTGCCCACGGCGCCCCCACCTGCAGACCTCACACCAGAGAGCAGGCCCCCCCTGGAAGAGGAGGAGCCCTCTAGCCCCACCCCCCCTGCTGTAACCCCCGAGAGCCCGGCCAGAGCCTGGGAAGGGCTTGAGAAAGAGGAGGGAGTCGGGGAGACCGAGGCGCCAGCAAGGCGAGAAGCTGAGGTGCTGAGGACCTCCCTGCCGACCCCCgttgaggaagaggaggaagagggaggagcCGGAGGCCATCGTGCAGAGATCGAGAAAGCAGAGGAAGAGATCAATGATGACaacgaagaggaggaggaggaagaggaagaagagagggagggcagCCAGCCCGTGTCCGTTTCGGAGATGAGCGAGACGCAGCccactgaggaggaggagggagacgAGGGGTTCGGACACGGGGCGGGGGCGGGCGGAGCCGCAGGGGGCCGAGCAGTAGAGCTCAGCGAGTCCCAGGGGGCCACGCTCACCTCGGAGGTGGACGAGTCCGAGGATGTGAGCTGCAGCCAGCCGGGCCTGTCTGAGCTCAGCGCCCCGCAGTCGGACCCGGGGCTCCTGGAGGGCACGGAGAGCATTGACGAGCTGGGCGACGCCAGCCTGAAGGGTGCGGAGGGGGAGGGTGTGTCTGCCGGGTCACCCGACATAGAGACTGTGCCCGAGATCCCCGCTCATGgagaggaggacgaggaggaggaaggagactACGTGTGCGACATGGATGTGGGCTCGGAGAGGGTGGAGGCCCCGAGGAGGAGgcgggaggaagaggaggaggaggacgacgagGACGTGGAGATGGCCAGCGAGGGCGTGACGGAGAGTGGGCTGGAGAGCTACGGCAACGCGGACGAGGACGACTTCGCTGAGGACGACCGGGCGGTGGACAACCTGAACCGCTGCCCCCCGGCCTCGCCCCCGCTCCCCCCTGCCCAGGCCTGGGCCCACAGCAACCCCTTCTCCCAGCCCTGGGCTCCGCGGCACCTGGAGGACGATGACACCACCCTTACAGACCCGCCCCAGGGCTCCGCCCCCGCGGGCACGCCCCCCCAGTCGCCCGCGCAGGCATGGCTGGAGCACAGCAGTGCTGTTGCTGCCGCCACCCCCCCTCGCGGCCTGGGCGCTGAtctgccctccccctcccatGAACCCGAGTCCTCCCCCATGGAGTGTGTAGCGGGACCTCCCAGCTTCTTCCCCGACTTGCCTTCCTCTGCCACCCAGGGTGCTCTGCGGGCCGATGCGAAGGACGAAATGGTGCCCACTGCACCGACTGctgcctgcctctctccctccccttctgCCCCCGCCGCCCCCACTGTCGCCTGCCTCTCCCCCTCTGCCCCCGGGCCCCTCCCCGAGCACGGGCTGTCCCAGTCCAGTACGCTGAGTGGCGCTGAGCTGGCTGCCCACAGCAGCAGCGAGACGAGCACACCGGAGGAGCTGAGGGACTACGACAGCAGCTCAGGGGTGGAGTCCCGCTCCGAGGACAAGCTGGAGGAGCCGGTGCCCGAGCCGACCCGGGCCCAGACCGCCGCACCCGAGCTGGAGCAGGACCTGGGCATCCACCTGGAGAAGGGAGACgacgaggaggaagaggagggggttGAAGGGGAGGAAGAGGCGGAGACCCTGCCCGCCGATGAGATCCTAGGAGACCCCCCCACAGAGCCTGCCTCCGCCCCCTCGTCCTCCTCATCCTCCGCCGCCTCGGAAGAAGAGGCGAGCGACACGGAGGGCGAGATGCAGATCAACGACCCCGAGGCCGACGGAATCGACAACCTGGCGTTCGAGACGAAGCCGGGCACTGGGGCGGCCGCGGGGCCTGGGGAGACGCCGGCCAATCGCGCTTCCCCGAACTCGGCCGCCGCCCTGTCCTCCGTCCAGGAGGCGGAGGAGACGAGCCTGCCGGGTGAGGGGGATGCAGACGGGGACGCGGACGCTGACTCGGCGGCCTCCTACGTCTTCGACTGCACCTCTGTGTCCAATGCCCAGTCCACCACGGACAGCTGCGGCAAGAGCCCCGGCATCTTCTCCCTGGAGAACGAGGAGCAGCTGCCAGAGGAGGCCAAGGATCTCTCACTCATCCAGGAGCTCAACCTGGCTGTGGGGGAGGGCAAGACCTTGGGTGTGGCTGTGCCGGACGACCTGCCTCTGCTCCCTGCCCTGCAGGGGGTGCCGCCGCCTGGGGAGCGTGGGCCGGAGCTGGAGTACATGCTGTGTGGGAAACCGGGCGCCGGCTCCGACCCAGACTTCCCTGGGAGCGCTGGCAGGGGGGGGTCCTCCTCCTCGCCTCCCGACTCGGCCGAGGAAAACTCGTCCTCGTCCCCGGCCTCCGGGGGGGAGGGCGACCCTGTGCCGTCCTACTACTCAACGGTTTGCGAAAAGACTGATATTGGGCTGGCAGGTAACGTATAAACCCGCGCTCCTTCGCGTCTTAGTGTTGTGCGTTTGTTTCCTGGTCAGAGAGGAAGatgggggaggagagagagagagagagatggggatgAAATGACTGAAAGATCCATAATTGTTCCATGATTGTATCTGTGCCATTCTCCCAGCATTACTATGACCATCTCCATTGATTTTTATACGGCTTGAACTCCTGTATGTGCAATAGCTATTATTACTACTCTTACTACTGCTAGAACTGTCTCCGTTCATTAACACGACACACACCCCCGCTCCCCCAGGCATGGACAGTCCGCCCAGTTTGACAAGCTCTTAAGTGACTGAAAGAaaagatggggaaaaaagaggaaagagagagggattgTATGAACTCTTTTCCTTCTGTATTTATCCTGCTGTTTTTACCGGAGAGAGaagcttttgtatttgttttgaaattataatCTGTACAAATCTGTCCCTAACCCCCCTCTACACACACCCTCTTCGCCTTCATTGTGTaagattaatttgtatttttttttgattgtttgagAATTTACATTAGCTTTGAATAAAGATTAGATATTTAACATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60888 lncRNA upstream 60742 266574 ~ 266881 (+) True G48721
TU60887 lncRNA upstream 63233 264020 ~ 264390 (+) True G48720
TU60884 lncRNA upstream 64601 260274 ~ 263022 (+) True AMCG00008376
TU60881 lncRNA upstream 69359 257582 ~ 258264 (+) True G48716
TU60796 lncRNA upstream 75141 251307 ~ 252482 (+) True G48647
TU60975 lncRNA downstream 87613 427881 ~ 488584 (+) True G48796
TU60985 lncRNA downstream 98715 438983 ~ 444637 (+) True G48803
TU60988 lncRNA downstream 116381 456649 ~ 458299 (+) True G48806
TU60996 lncRNA downstream 133477 473745 ~ 551906 (+) False G48811
TU61003 lncRNA downstream 148357 488625 ~ 489866 (+) True G48818
AMCG00008386 mRNA upstream 15639 307986 ~ 311984 (+) True AMCG00008386
AMCG00008373 mRNA upstream 53637 269760 ~ 273986 (+) True AMCG00008373
AMCG00008376 mRNA upstream 65715 260324 ~ 261908 (+) False AMCG00008376
AMCG00008374 mRNA upstream 71401 253479 ~ 256222 (+) True AMCG00008374
AMCG00008372 mRNA upstream 84569 234895 ~ 243054 (+) True AMCG00008372
AMCG00008389 mRNA downstream 1494 341762 ~ 344446 (+) True AMCG00008389
AMCG00008385 mRNA downstream 12298 352566 ~ 358341 (+) True AMCG00008385
AMCG00008390 mRNA downstream 49340 389608 ~ 414932 (+) True AMCG00008390
AMCG00008391 mRNA downstream 85559 425827 ~ 427345 (+) True AMCG00008391
AMCG00008396 mRNA downstream 153972 494240 ~ 506457 (+) True AMCG00008396
TU60768 other upstream 160125 166958 ~ 167498 (+) False AMCG00008375
TU60757 other upstream 234743 87317 ~ 92880 (+) False AMCG00008369
TU60995 other downstream 210013 550281 ~ 551906 (+) True G48811
TU61033 other downstream 247012 587280 ~ 588446 (+) True G48846
TU61256 other downstream 536286 876554 ~ 879513 (+) True G49013
TU61359 other downstream 625570 965838 ~ 968583 (+) True AMCG00008423
TU61499 other downstream 982543 1322811 ~ 1324269 (+) True G49208

Expression Profile