RNA id: AMCG00008385


Basic Information

Item Value
RNA id AMCG00008385
length 1270
RNA type mRNA
GC content 0.60
exon number 6
gene id AMCG00008385
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 352566 ~ 358341 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGGGGGTCGGTCTGGAACTGTCACACTGATACTGGGACACACTACTGGATATATTGCTTTctggtttaaattaattttattccatACGTACTTTTCCTTGCAGGTCTCCACTATTGCATATTGCAGACTATAAATTAGAGGGAGAATACTTCTTATAGGATATCATGTATACGTAAATGTATCGTACAACAATACTTGTATATTAGTTTTAGATCCGCAGGCGCAATGAAGGGAATGCTGTACGTCACTGCCCTCGCCCTGGCCTGCGTCTGTGCGGTGTGCCCCCGCCGGCTCAACCAGGACTGCCGCGTGGGGCTTCCCTGCGACGCCAGCAGGGGCCTGTACTGCAACTATGGCAACAGCCACAGCAGTCTCTGGGGCATCTGCAGAGctgggCAGGAGGGCCGTAGCTGTGAGTACAGCGGCCGCATCTACCAGAGTGGCGAGGTGTTCCGGCCCAGCTGTGCGGAGCGGTGCAGCTGTGTGGACGGGACAGTGGGCTGTGAGTTCCTGTGTCCGGGCGACCTGCAACTCTCCTCCGCCGCCTGCCCCCGCCCCCTCCGCCTGCTGCGCCCGCCCGGCCGCTGCTGCCACACCCTGGTATGCCACAAGGGGGAGCTCCCTCCGCCGCTGCTGGGGAAATCCAAATCCAAGTCCAAATCCAAATTCCCCAAGTCTTCGAAGTCTGTTTTATCCTCAAAGTCTGACTACCTGTCCCtctgggggggatggggggagaggaggaaggaggaagaggaggaggagaaggggaggagggagagggagcagaaCGAGCTGTACGAGCCAGAGAAGGACAGCGAGAGAGGAGGGCACAAACATCTGGCAGcctGGAGGCCAGCGAGGCTTCCTGTCCAGCACTGCGTTGTCCAGATGACGGACTGGTCGCCGTGCTCTCGCAGCTGTGGGATGGGCGTGTCCTTGCGCGTGACCAACCAGAATGGGCAGTGCAGGCCGGAGAGGGAGACACGCCTCTGTAACCCCCAGCCCTGTGACATCACAGCCCTCGCACTGAAGCACTCCCCTGAGCCGGTGCACCTGTGGTCGGATGGCTGCCGCAGTGTCCGGCGATTCCGGCTGCTGAAGTGCGGTCAGTGTGCAGGGGGGCGGTGCTGCAGGCCGCGGCGGCTGCGCAGGCTGCGGGTGGAGTGGACATGCGCGGCTGGGCAGCAACTGCAGCGTGAGTGTGTACGAGATGTGTCCGTCAGTCTTAACGAGGCGGCTCCGCACACCCCCAGCTCCGTCCGGAGG

Function

GO:

id name namespace
GO:0006265 DNA topological change biological_process

KEGG:

id description
ko03460 Fanconi anemia pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60888 lncRNA upstream 85685 266574 ~ 266881 (+) True G48721
TU60887 lncRNA upstream 88176 264020 ~ 264390 (+) True G48720
TU60884 lncRNA upstream 89544 260274 ~ 263022 (+) True AMCG00008376
TU60881 lncRNA upstream 94302 257582 ~ 258264 (+) True G48716
TU60796 lncRNA upstream 100084 251307 ~ 252482 (+) True G48647
TU60975 lncRNA downstream 69540 427881 ~ 488584 (+) True G48796
TU60985 lncRNA downstream 80642 438983 ~ 444637 (+) True G48803
TU60988 lncRNA downstream 98308 456649 ~ 458299 (+) True G48806
TU60996 lncRNA downstream 115404 473745 ~ 551906 (+) False G48811
TU61003 lncRNA downstream 130284 488625 ~ 489866 (+) True G48818
AMCG00008389 mRNA upstream 8120 341762 ~ 344446 (+) True AMCG00008389
AMCG00008384 mRNA upstream 12298 327623 ~ 340268 (+) True AMCG00008384
AMCG00008386 mRNA upstream 40582 307986 ~ 311984 (+) True AMCG00008386
AMCG00008373 mRNA upstream 78580 269760 ~ 273986 (+) True AMCG00008373
AMCG00008376 mRNA upstream 90658 260324 ~ 261908 (+) False AMCG00008376
AMCG00008390 mRNA downstream 31267 389608 ~ 414932 (+) True AMCG00008390
AMCG00008391 mRNA downstream 67486 425827 ~ 427345 (+) True AMCG00008391
AMCG00008396 mRNA downstream 135899 494240 ~ 506457 (+) True AMCG00008396
AMCG00008395 mRNA downstream 148602 506943 ~ 509857 (+) True AMCG00008395
AMCG00008397 mRNA downstream 160917 519258 ~ 525325 (+) True AMCG00008397
TU60768 other upstream 185068 166958 ~ 167498 (+) False AMCG00008375
TU60757 other upstream 259686 87317 ~ 92880 (+) False AMCG00008369
TU60995 other downstream 191940 550281 ~ 551906 (+) True G48811
TU61033 other downstream 228939 587280 ~ 588446 (+) True G48846
TU61256 other downstream 518213 876554 ~ 879513 (+) True G49013
TU61359 other downstream 607497 965838 ~ 968583 (+) True AMCG00008423
TU61499 other downstream 964470 1322811 ~ 1324269 (+) True G49208

Expression Profile