RNA id: AMCG00008386



Basic Information


Item Value
RNA id AMCG00008386
length 587
RNA type mRNA
GC content 0.47
exon number 6
gene id AMCG00008386
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 307986 ~ 311984 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TTTCCAACAGGCTGGATCTGTACATGGTTGGTGGTTTCCATGATGAGAGACGCATTTCCTCTGAGAACAGCATGATGCTTCTCAGGGAATTTATGAAGCAGGACATAGACATTAATCTTCAGCTGGCCTGTGTGTCAGAGCTCAATGATGTTGTCAAGGAAGAGAATCACTGGCCGAAAGTGTACGGCATCGGAGTTCAACTTCAAGGCCTGTCGATCTCTGTTTACCCAGCTAAATTTCCAACCAGACTACCTGAGACAAATCTCAGAGGAGCCAGACTCTCTATGGACAGAACGATGCGACGTGTGTACGACCAAACAAAAGGTGTACTGACCCTCGGGCCGTACACGTGGTTCGCAAATATTCTGAAGAGTGAGGATGCCAGCCGGAATTTGACGGACGGTGAAATCCGGAGGaaaTTTTCAACCTCCCCTCTGGTTGAAGAGCCAGAATTCCCACAAATGCTTCGGGATTCGTACAAGTACCTTGCTGACAATGTGATGCTTACTTCAACTGGGAAGATGCCTCTTGTGTATGAAATGAATGGCAATGGAGACTGGATCCTTCGCACCAACCTGtctcaataa

Function


GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation
ko05340 Primary immunodeficiency

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU60888 lncRNA upstream 41105 266574 ~ 266881 (+) True G48721
TU60887 lncRNA upstream 43596 264020 ~ 264390 (+) True G48720
TU60884 lncRNA upstream 44964 260274 ~ 263022 (+) True AMCG00008376
TU60881 lncRNA upstream 49722 257582 ~ 258264 (+) True G48716
TU60796 lncRNA upstream 55504 251307 ~ 252482 (+) True G48647
TU60975 lncRNA downstream 115897 427881 ~ 488584 (+) True G48796
TU60985 lncRNA downstream 126999 438983 ~ 444637 (+) True G48803
TU60988 lncRNA downstream 144665 456649 ~ 458299 (+) True G48806
TU60996 lncRNA downstream 161761 473745 ~ 551906 (+) False G48811
TU61003 lncRNA downstream 176641 488625 ~ 489866 (+) True G48818
AMCG00008373 mRNA upstream 34000 269760 ~ 273986 (+) True AMCG00008373
AMCG00008376 mRNA upstream 46078 260324 ~ 261908 (+) False AMCG00008376
AMCG00008374 mRNA upstream 51764 253479 ~ 256222 (+) True AMCG00008374
AMCG00008372 mRNA upstream 64932 234895 ~ 243054 (+) True AMCG00008372
AMCG00008371 mRNA upstream 89111 214645 ~ 218875 (+) True AMCG00008371
AMCG00008384 mRNA downstream 15639 327623 ~ 340268 (+) True AMCG00008384
AMCG00008389 mRNA downstream 29778 341762 ~ 344446 (+) True AMCG00008389
AMCG00008385 mRNA downstream 40582 352566 ~ 358341 (+) True AMCG00008385
AMCG00008390 mRNA downstream 77624 389608 ~ 414932 (+) True AMCG00008390
AMCG00008391 mRNA downstream 113843 425827 ~ 427345 (+) True AMCG00008391
TU60768 other upstream 140488 166958 ~ 167498 (+) False AMCG00008375
TU60757 other upstream 215106 87317 ~ 92880 (+) False AMCG00008369
TU60995 other downstream 238297 550281 ~ 551906 (+) True G48811
TU61033 other downstream 275296 587280 ~ 588446 (+) True G48846
TU61256 other downstream 564570 876554 ~ 879513 (+) True G49013
TU61359 other downstream 653854 965838 ~ 968583 (+) True AMCG00008423
TU61499 other downstream 1010827 1322811 ~ 1324269 (+) True G49208

Expression Profile