RNA id: AMCG00008412


Basic Information

Item Value
RNA id AMCG00008412
length 1695
RNA type mRNA
GC content 0.67
exon number 7
gene id AMCG00008412
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 716095 ~ 719874 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gaCAACTGTGAGCGCACTGAGAACGCTCTGAGCCTCTGGGTGAATGACGCCAAGGACCTGCAGCCCAAGAAGCGCTACTACTGCGAGCTTCACCTGGACGGCACCCTGTACGCCCGCACCACCAGCCGGCCCAGCACCAAGAGCCCCGTGGCGGGCGGCGGTGGGGGCGGGGGCAGCGgcggaggaggagagggaggaggagatggagggggagggagcggCAGCAGCGGGCAGCTGTTCTGGGGGGAGCTGTTTGAGCTGGACAACCTGCCGCCCGTGTCCCAGGTCACCCTGCACCTGTTCCGAGACGAGGAGCCCAAGAAGAAGGGAGGCAGCGGCGGGGCGGCCAGGGAGGACACGCACCACCCCCTAGGCAGCGTGGCCATCCCCCTGGCGCAGATCTCGGGCCGGGTTTTCCAGGAGAGCTGGTACCGCCTGGTTCCCTACGCCGCCACCTCCGGGTCTGCCGCCGGCTCCAGCCAGGCCTCCATCCGGGTCAAAGCCCGCTTCCAGAACCTGCGGGTGCTGCCCATCGAGCGCTACAAGGAGTTCGCCGAGCAGCTGACGTTCCGCTACGCAGAGCTGTGCCACGGGCTGGAGCCGCTGCTGAGCGTGCGCGAGAAGGAGGAGCTGGCCGGCGCGCTGGTGCACGTGCTGCAGAGCGTGGGCAAGGCCAagAACAATCAGAAGAACCTGAGGGAAGGCTGTGAGGAGGCGTTCCAGAAAATCACTGAGACttacagTTCGTTCCCCGTGGAGTTGAATGAGATCTTCTCCGTGTGGCGCGAGGACTGCGAGGTGGCGGGGCGGGGTGCCGTGCTGGAGCGCATGATTGGTGCATCCTTGTTCCTGCGCTTCCTGTGCCCCGCCCTCCTCAGCCCCAGCCTGTTCGGCCTGGCCCCTGCCTACCCCGGCCCCCCAGCCCTGCGCGCCCTCACCCTCACCGCCAAGGTCATCCAGAACCTGGCCAACTTCACACCGTTTGGCGAGAAGGAGGAGTACATGCTGTTCATGAATGGGTTCCTGGAGTCCCACTGGGGGGCCATGCGGGGCTTCGTGTCCACAGTGTCCAGCCCCGATGGACAGCTGGACATGGCGCGCTTCGACGGCTACGTGGACCTGCCCCTGCGACTGGCCGTCCTGCACCGGCTGCTCACCCACATCCTGTCCACCAAGGACCAGTACAGCCCGATGCACAACTCCATGCAGCTGATCTGTGGGGGGGTAGGGGGACCGGACGGGGCGGGCGGGGCCCAGCCGGGGTTGCTGGGGGCGAAGGAGAGAAGGCGGATCCAGAGGACACAGAGCGTCCCCGAGAGGGATCGCACCCGGCGCCCACCCCCGCGCAGACAGATCAGCACGGAGAACCTGTCCCTCAGCCAGCAGGACCTGCAGGctgATGCCCTGGGGGACTTGGTCAGGGAAGGGGGTCCGGGGCGTGCCAGTGAGAGAGACCACTCGGGCGAGGGTGGAGAAGGAGTGGAGCGGGGGTGCAGTGCTCTGGAGcATGAGCAGGAGTTATGTGagctgcgtgtgtgtgtggaccaGGTGACAGAGAGGGACCTGGAGCTGGCCAAGAGGCTGGAGGACTTCATTGCGCAGAGCCAGGACCAGCATGCACTGCTGCAGGCCGAGCTGCAGGAGCTGCGGGGACAGCTGGCGGCCAAGGAGGAGGAGCTGGCCACTGCCACCTTC

Function

GO:

id name namespace
GO:0043085 positive regulation of catalytic activity biological_process
GO:0007165 signal transduction biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61166 lncRNA upstream 19982 694468 ~ 696113 (+) True G48947
TU61136 lncRNA upstream 25058 640876 ~ 691037 (+) False G48921
TU61135 lncRNA upstream 74191 640876 ~ 641904 (+) True G48921
TU61127 lncRNA upstream 83702 629884 ~ 632393 (+) True G48915
TU61185 lncRNA downstream 28724 748598 ~ 750602 (+) True G48961
TU61233 lncRNA downstream 45997 765871 ~ 783981 (+) False G48996
TU61232 lncRNA downstream 62306 782180 ~ 783981 (+) True G48996
TU61332 lncRNA downstream 209832 929706 ~ 930827 (+) True G49066
TU61335 lncRNA downstream 213271 933145 ~ 936281 (+) True G49069
AMCG00008410 mRNA upstream 3476 709248 ~ 712619 (+) True AMCG00008410
AMCG00008403 mRNA upstream 86658 609033 ~ 629437 (+) True AMCG00008403
AMCG00008402 mRNA upstream 175051 540113 ~ 541044 (+) True AMCG00008402
AMCG00008397 mRNA upstream 190770 519258 ~ 525325 (+) True AMCG00008397
AMCG00008395 mRNA upstream 206238 506943 ~ 509857 (+) True AMCG00008395
AMCG00008411 mRNA downstream 55517 775391 ~ 778431 (+) True AMCG00008411
AMCG00008418 mRNA downstream 65552 785426 ~ 799063 (+) True AMCG00008418
AMCG00008417 mRNA downstream 86885 806759 ~ 813360 (+) True AMCG00008417
AMCG00008419 mRNA downstream 102804 822678 ~ 843135 (+) True AMCG00008419
AMCG00008429 mRNA downstream 227783 947657 ~ 950842 (+) True AMCG00008429
TU61033 other upstream 127649 587280 ~ 588446 (+) True G48846
TU60995 other upstream 164189 550281 ~ 551906 (+) True G48811
TU60768 other upstream 548597 166958 ~ 167498 (+) False AMCG00008375
TU60757 other upstream 623215 87317 ~ 92880 (+) False AMCG00008369
TU61256 other downstream 156680 876554 ~ 879513 (+) True G49013
TU61359 other downstream 245964 965838 ~ 968583 (+) True AMCG00008423
TU61499 other downstream 602937 1322811 ~ 1324269 (+) True G49208
TU61614 other downstream 1210780 1930654 ~ 1936502 (+) True G49298
TU61588 other downstream 1372087 2091961 ~ 2105573 (+) False AMCG00008475

Expression Profile