RNA id: TU61359



Basic Information


Item Value
RNA id TU61359
length 855
RNA type TUCP
GC content 0.51
exon number 4
gene id AMCG00008423
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 965838 ~ 968583 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GGTCGACGCGGCGATCCCGGCAGTGCCGTGAAGGTCACAGACATGGGAGTCCGGCTGGAAATCTTCCGGATGATGCTGTACCTGTCCTTCCCGGTGACAATGTTCTGGATCTCCAACCAGGCCGAATATTTCGAGGAATACGTGGTGAAGAGAAAGAGGGAGCTGTACCCCCCCGATGAGAAGCTGCAGAAAAAGAGGCTGGAGGAGTTTCGGGACCgtgtgagggagaggagggagctCAAGATGCAGGGCGAGATGGAGACGGGGACGCAGTAGGACCAGTGAGGTGGGAGCGGCCCCCGAGCTGACCCTTGGCCCAGAGCACAGAGCGGACAGGACCAGCGGGCCCGGGCTGTCCCTGCCTCTGCTCTTTGTCCCTAATGAGAAATGTGAGACTCTTAAGCACAGGAACGTGCAAACTTATATTAGCAGGCCTTGTGTGCAAACTGCCCCACTGCACCCTTAATCAGGTATCAGGTGGGCGGTCAAAAACGGGGCCTGCGCAGGAAGACGTGGAAATAAAATCTCATCGCCTTTTCTTTGTGTGCttatttatccttttttttttttaatctgttcaaTTAGAGAAACAAGCTTAACgaatcaaaacattaaataactaatctTTTTTTCAAGCCCAGTTGATTTCTCCGCTACTTCAAAGtacaagaacagaaaacaaaaccacgcTGGGGGTGTAAATACGCCCTACAAAGACCTCTGGATGCAGGGACGAGGGCCAAGCTGAAAATGAAATCTCGTGGCCCTGGGCTGTAATATATCGGCAACTGGAGACCGTGATAAATGTCTTGTGCAAAGCCGTGTGTGATTTCTGTAAATATGATGCCATTAAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU61335 lncRNA upstream 29557 933145 ~ 936281 (+) True G49069
TU61332 lncRNA upstream 35011 929706 ~ 930827 (+) True G49066
TU61233 lncRNA upstream 181857 765871 ~ 783981 (+) False G48996
TU61232 lncRNA upstream 181857 782180 ~ 783981 (+) True G48996
TU61185 lncRNA upstream 215236 748598 ~ 750602 (+) True G48961
TU61376 lncRNA downstream 89978 1058561 ~ 1107290 (+) True G49101
TU61377 lncRNA downstream 94966 1063549 ~ 1068033 (+) True G49102
TU61371 lncRNA downstream 111438 1080021 ~ 1117780 (+) True G49097
TU61383 lncRNA downstream 117987 1086570 ~ 1087158 (+) True G49107
TU61386 lncRNA downstream 124138 1092721 ~ 1096634 (+) True G49110
AMCG00008429 mRNA upstream 14996 947657 ~ 950842 (+) True AMCG00008429
AMCG00008419 mRNA upstream 122703 822678 ~ 843135 (+) True AMCG00008419
AMCG00008417 mRNA upstream 152478 806759 ~ 813360 (+) True AMCG00008417
AMCG00008418 mRNA upstream 166775 785426 ~ 799063 (+) True AMCG00008418
AMCG00008411 mRNA upstream 187407 775391 ~ 778431 (+) True AMCG00008411
AMCG00008424 mRNA downstream 7644 976227 ~ 983656 (+) True AMCG00008424
AMCG00008431 mRNA downstream 17394 985977 ~ 994819 (+) True AMCG00008431
AMCG00008430 mRNA downstream 41812 1010395 ~ 1033311 (+) True AMCG00008430
AMCG00008432 mRNA downstream 84012 1052595 ~ 1055755 (+) True AMCG00008432
AMCG00008433 mRNA downstream 107547 1076130 ~ 1078396 (+) True AMCG00008433
TU61256 other upstream 86325 876554 ~ 879513 (+) True G49013
TU61033 other upstream 377392 587280 ~ 588446 (+) True G48846
TU60995 other upstream 413932 550281 ~ 551906 (+) True G48811
TU60768 other upstream 798340 166958 ~ 167498 (+) False AMCG00008375
TU60757 other upstream 872958 87317 ~ 92880 (+) False AMCG00008369
TU61499 other downstream 354228 1322811 ~ 1324269 (+) True G49208
TU61614 other downstream 962071 1930654 ~ 1936502 (+) True G49298
TU61588 other downstream 1123378 2091961 ~ 2105573 (+) False AMCG00008475
TU61627 other downstream 1159132 2127715 ~ 2143310 (+) True AMCG00008476
TU61670 other downstream 1240900 2209483 ~ 2211514 (+) True G49340

Expression Profile