RNA id: AMCG00008424


Basic Information

Item Value
RNA id AMCG00008424
length 1428
RNA type mRNA
GC content 0.60
exon number 16
gene id AMCG00008424
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 976227 ~ 983656 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGCTGCCTGTTGCCTATGGCACCCAGCAGAACTGGACAATGAATGTCCTGATCGTCGATCACCCCAGCATGAGGATCCTGTCTTCCTGCTGCAAGATGTCTGACATCATGGCAGAAGGGGTCACCATTGTGGAGGACCTGAACAAGCGAAGGGAGCCCATCTCCAGTCTGGAGGCCATTTACCTCATCTCCCCCACGGCTCAGTCCATCAAGGCCCTGATAAACGACTTCAGAGAGACGACGTTCACGTACAAGGCTGCCCACGTCTTCTTCACCGACATCTGTCCTGACGGCCTGTTCTCAGAGATCGGCAAGGCCAGGGCGTCTCGCTTCATCAAGACCCTGAAGGAGATCAACgtggccttcctgcccaaggagTCGCAGGTGTACTCCCTGGACAACCCCTCCTCGTTCTACACGCTGTTCAGCCCCCATCGCACCGCAGACAAGAACACCCTGATGGAGAACATGGCCGAGCAGATCGCCACGCTGTGCGACACGCTGAAGGAGTACCCCGCCGTGCGATACCGCAAGGGCCCGGAGGACAACGCTCTGCTCGCTGGGATGGTGCTGGACCGGCTCAATGCTCACAAGGCTGACAACCCCAGCATGGGAGAGGGGGCAGACAAGGCCCGCTCCCAGCTGCTGATAGTGGACAGAGGTTACGACCCCGTTCGGGAGAAGGAGGTCCTGCTGGACGAGGACGATGACCTGTGGGTGCAGCTCCGCCACATGCACATTGCCGATGCCAACATCAAAGACCTGTCACAGATGCTGAAGAAGATGCCCCAGTACCAGAAGGAGCTGAGCATTAGCATTGTTCCGGTGCTGCTGAACACCGAGGTGCAGCCGCTGGACAAGATCCGCATCATCCTGCTCTACATCTTCCACAAGAAGAAGGGGGTCGGGGAGGAGAGCCTGACCAAGCTGATCCAGCACGCCAACATCCAGCAGGACAGCAACATCATCCACAACCTGCAGCGGCTTGGCTGCCCCATCATCGCTGGGGGCACCAACACCGGGAGTGCCATACCTGACAGGAAGGAGCGGACAGAGAGCACCTACCAGCTGTCCCGCTGGACACCTGTCATCAAGGATGTCATGGAGAACGCCATAGAGGACAAGCTGGACAAGAAGGCGTGGCCCTTCATCTCTGACCCCGCTCCCATCCCCACCACCCAGACTGCAGTCAGTAGTGCCCGGTTCGGCCACTGGCATAAGAGCAAGTCCCCGGCGGAGAGCCGCTCGGGGCCGCGGCTCCTGGTCTTCATGCTGGGGGGGGTGGCGCACTCGGAGATGCGCTCGGCCTATGAGGTGACGCGCGCCCTGGACGGCAAGTGGGAGGTGGTCATCGGCTCCACCCACATCCTCACCCCCCGCAGCTTCCTGAGCGACCTCAAACAGCTGGACCAGCCGCCCCAGTAG

Function

GO: NA

KEGG:

id description
K15300 STXBP2, MUNC18-2; syntaxin-binding protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61335 lncRNA upstream 39946 933145 ~ 936281 (+) True G49069
TU61332 lncRNA upstream 45400 929706 ~ 930827 (+) True G49066
TU61233 lncRNA upstream 192246 765871 ~ 783981 (+) False G48996
TU61232 lncRNA upstream 192246 782180 ~ 783981 (+) True G48996
TU61185 lncRNA upstream 225625 748598 ~ 750602 (+) True G48961
TU61376 lncRNA downstream 74905 1058561 ~ 1107290 (+) True G49101
TU61377 lncRNA downstream 79893 1063549 ~ 1068033 (+) True G49102
TU61371 lncRNA downstream 96365 1080021 ~ 1117780 (+) True G49097
TU61383 lncRNA downstream 102914 1086570 ~ 1087158 (+) True G49107
TU61386 lncRNA downstream 109065 1092721 ~ 1096634 (+) True G49110
AMCG00008423 mRNA upstream 8223 965880 ~ 968004 (+) False AMCG00008423
AMCG00008429 mRNA upstream 25385 947657 ~ 950842 (+) True AMCG00008429
AMCG00008419 mRNA upstream 133092 822678 ~ 843135 (+) True AMCG00008419
AMCG00008417 mRNA upstream 162867 806759 ~ 813360 (+) True AMCG00008417
AMCG00008418 mRNA upstream 177164 785426 ~ 799063 (+) True AMCG00008418
AMCG00008431 mRNA downstream 2321 985977 ~ 994819 (+) True AMCG00008431
AMCG00008430 mRNA downstream 26739 1010395 ~ 1033311 (+) True AMCG00008430
AMCG00008432 mRNA downstream 68939 1052595 ~ 1055755 (+) True AMCG00008432
AMCG00008433 mRNA downstream 92474 1076130 ~ 1078396 (+) True AMCG00008433
AMCG00008441 mRNA downstream 255708 1239364 ~ 1245755 (+) True AMCG00008441
TU61359 other upstream 7644 965838 ~ 968583 (+) True AMCG00008423
TU61256 other upstream 96714 876554 ~ 879513 (+) True G49013
TU61033 other upstream 387781 587280 ~ 588446 (+) True G48846
TU60995 other upstream 424321 550281 ~ 551906 (+) True G48811
TU60768 other upstream 808729 166958 ~ 167498 (+) False AMCG00008375
TU61499 other downstream 339155 1322811 ~ 1324269 (+) True G49208
TU61614 other downstream 946998 1930654 ~ 1936502 (+) True G49298
TU61588 other downstream 1108305 2091961 ~ 2105573 (+) False AMCG00008475
TU61627 other downstream 1144059 2127715 ~ 2143310 (+) True AMCG00008476
TU61670 other downstream 1225827 2209483 ~ 2211514 (+) True G49340

Expression Profile