RNA id: AMCG00008430


Basic Information

Item Value
RNA id AMCG00008430
length 5899
RNA type mRNA
GC content 0.63
exon number 16
gene id AMCG00008430
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 1010395 ~ 1033311 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCGGACAGCCTGGAGACGTTGCAGCCCATGTGGCTGCAACGTCTCCAGGCTGTCCGGCATCGAtttcagcacagagagagaGGGGGGGCGCCGCGGGACAACACCGCCCTGCTGCAGCTCCTGGCCTGCAGGGGGGTGAGCCTCCAGGAGCAGGATGTGCCCGTGACAGAGGCCGACCTGCGGCACAAGCCCATCAAGATGGGCGCTCACTTGGCGGTGATTGACGGGCTGATGTCGCTCTGTGCCATGGAAACGATGAGCGCTGCCAAGATGCCCAGCGGACTGGAGAAGTTCGGCGGGGGCAGCCAGTGGGAGAACGCCGTGCTGTACTGGGTCAACAAGatccgCTACAGGAAAGACAAGATGCTGCCCAAGCAGACGCCCACGTTTCCCCTGGTGGCCAGTGTGAAGGACCTGTCTAACGGCTGTGCCATCGCTGCCCTGGTGCACTTCTATTGCCCCAGCCTGCTCAGACTGGAGGATGTCTGTCTGAAGGACACCATGTCGCTCAACATCATGGCCTTCATGGCGGAGCTGTTTGGCTGGTTTGAGGTGAGGAAGCCGGACTTCGTTCGCCCCAAGGAGCCCGTGGACCTGGAGGACCCGTCCGGACTGAGTGACTGCACAACCCCAACCAGCGCCAACAGCAACAGTGCCTCCCCCGCCTTCGTCTTCAAGCAGCACTTCTTGCCCATCAGCTCCCCCCTGTCGCCGGGCGGCGGGTCAGGAGCGCTCACTCAGTCTACCTCAATGCCACACGTGGAGGGAGTTGGCAAGAGCTGGAGCAAGAAGCAACTCAGccggCCCCTGTCCTCTGCCGTCTCCTTCAGCATCCCGTTCGGCCTGGACAGCGACGTGGACATCGTCATGGGTAACCCGGTGGCCATCACGCGCTCGGTGAGCTCCGACAGTCTGGCCCCCCCCGCCGCCCGCGCCACCTACACCCCCCCCGAGGAGCTGACGGGCTTCCCAGTCAAGGCGGGGGCCGCGGTGCCGGCGCAGGTGGGGCAGAACGGGCCCCTGGTCACCCCGAGAGCATCCTGGGGCACGCAGACGCCCCCCGTGAAGATGTGTGTGAcgaagaagaggagagaggaggaggaggaggaggagccggaGGACCTGGGCGGGCCGGAGGAGGGTCTGGAGAACGGGCTCCTGGATGACGGGGGGCTGTACGGCGACCTGCCCACCATCGAGGAGGCACTGCAGATCATCCAGAGCGGCGGCAAGAGGGAGCCCCGGCTGCGGCCTGACGGGGCCCCCGATGGTTTCTACCTGCACTCGCCCGATGAGCCCGGCAACTACCGGCACCACAGCCCGGGCCCCCCCTCGCGCCTCAGCTCCTCTGCGCCGTCCCGCTCGGGCCTGCTGTACCGGCCGGTGGGGGAGCCGCTGGAGCGtgaccagaaccagaaccagaaccagaaccagaaccagaaccagaaccagaacccgCGTCGGCCACGCCGGACATCCGAGGGCTCGCGTATCTCCCGGGATGATGACTCCGTCTTGCGGGACGGCAGCGTGGACTCCGACGCCTCTGAGGACACCCCGCCCCGGGCGCCCCCCGGGGCCACCCCAGCGGCCAGGGAGGGCCCCAGGGAGGAGGCCCTGTCCTCGTCCTCGGACAGCGGCGTCCGGATGACCAGCTTCGCCGAACGCAGGAAGAAGCTGGGCCCGCCCACACCCGCCACGCCCCCGCCTGCCGAGTCGCCCGAGCCCCTCATGACCAGCTGGGCACAGAGGTCCCACCAGCAGGAGGATGGGGGCGGAACGGGCGAGGGCGAGGACAGCCCCAGCAAGAGCCCAGCCCTCAACACCGAGATGTCCCAGCTGGGCGCCCGGCTGGAGGAGAAGCGGCGTGCGATCGAGGCGCAGAAGAAGCGCATCGAGGCCATCTTCGCCAAGCACCGGCAGCGCCTGGGCAAGAGTGCCTTCCTGCAGCTCAAGAAGCAGCAGCGCCCCGGGGGCGAGACGGAGGCCGAGGGCGAGACCAGCGTCTCCAGCACCGAGGATGACCTGAGTCGGCTCACCCTGGAGGAGCGGCTGGCGAAGATTgaggacgaggaagaggaggcagaCGGCGGGGCGCCGGGCCAGGGGAGCGACGGTAAGGCGGGCAAGCCGGCTGCACGCTCGGAGAAGCAGGTCACCTTCTCCCCGGAGATCAGGAAGCCGGCAGTGGcagcgggaggaggaggagagccagaggaggaggaagagcagccCCAGCTGGGCGAGTACAACCGCGCCGTGTCCAAGCTGAACGCGGCGCTCAGCTCCCTGCAGAGCGACATGCAGCGGCTGTCCGAGCAGCAGCGCCAGCTCATGGTGAAGAAGAAGCCGCCCGCCACCCAGGCCTGGGTCATCCCCGCCAAGCACCCCGCCCCCCGTGTGTCCCGCGAGCCCACCCCCCGCTCCGTCGCCGGCCtggcctcctcttcctcctcgcCCTCCCCCTCGCCCTCCCGGAAGATGGCCCCCCACACCGTCTCCACCCCGCCCAAGTCGCCCCAGCTGCCCCAACGCAGGGCCCAGTCGGCGCCGCCAAAGAGCCCCAAGCACAGCCGGCCGCTGGACCTCAAGTTCCCGCCGCTGACCCGTGTCCTGACCCCGCCCCAGAACGTGGACACCATCCCCCACCTCCGCCGCTTCTCACCCAGCACCTGCCAGGTCCAGACCGCCTCCTCCTTCAGCATCGGCCAGTCCAAGAGCCCCCCGGAGCCCCCCAAGCCCGCCGGGCTCCCGAGCCGGCCGCCGCACGAGGATGACTCCTCCGAGACGGGCTCCAGCGAGGACCCCGCCTTCCCGGGGCTGGAGCTGGAGGGGCCGTCTTCCGGGGCCCGGCCCCATGGCCTGTCCTCGGTCTGGTCATCCTCCTCCACGCGGCGGGAGCGGGGGGGCGGCAGCAGCTCGGGGGCGCCCTCGGAGTGCTCCTTCGAGAGCGACCCCCAGCCCTCGCTCAACGGCAAGCGCAGCAGCCTGATCGAGATCTCGCTGGCCTCCCTGCGCACCGACGAGGGCGAGGACGGGCCCGAGGCCTTCAGCGACTCCATGAGCGACAACACGGAGCCCGAGGGCCAGAGGAGTGGCGTGGGCTTCTTCTACAAGGACGAGGTGCGGCCGGAGGACGAGATGGCCCAGCGCCGGGCCGCGCTGCTGGAGAAGCAGCAGAAGAGAGCGGAGGAGATCAAGAAGCGGAGGCAGTGGcaggagcaggagagggaggccaggcCCTCCACTGCCGAGGACCCCACGCCGCCGCCGCCACCCCCCGCCCCCGAGGGCACCCCCCAGCGGCGCGGTGACTTCACACGGCAGGAGTACCAGCGGCGGCACCAGCTCAAGATCATGGAGGACCTGGACAAGGTTCTGCGGCAGAAGCCCACGACGGTGCGCGGTGTGAAGAAGCAGCGGCCCAAGACCGTGTTCCGGGACGACTCGGTTCTGGCGCGCAGCCCGGTCAAGGGCTTCATGGgttCGAGGCTCAGCAAGGTCTACTCCCACTCCACGCTCTCTCTGTCCACCATGGCCAACGACACGGGCAACTCCCTCTCCGTGAAGAAGTCCCCCAGATCTCATTCGCCCTCGGGCCTGATGTCACCCAGCCGCTTGGCCAGTCAGAACGGAGAGAAGGACTGGGAGAACGCCTCCACCGCCTCCTCTCCCGCGTCCATCCCAGAATACACCGgTCCCAAGCTGTACAAGGAGCCCAGCTTCAAGTCCAACAAGTTCATCATCAACAACGCCctctcccgctgctgcctggcGGGCAAGGTCAACGAGCCGCAGAAGAACAAGATCGTGGAAGAGATGGAGAAGAGCAAGGCCAACCACTTCCTGATCCTGTTCCGCGACTCCTCCTGCCAGTTCCGCGCCGTCTACACCATGAACCCCGAGACGGAGGAGATGACCCGGCTGACGGGCATCGGGCCGCGGGTCATCACCAGCGCCATGGTGGAGGCCATCTACAAATACAGCTCGGACCGCAAGCAGTTCACCGCCATCCCGTCCAAGACCATGTCCATGAGCGTGGACGCCATCACCATCCAGGGCCACCTGTGGCAGAGCAAGCGGCCCACCACCCCCAAGAAGCCGGGCACCCCCAAATAGGGCCCCGAGGGACCCCTCCGACCGAGCGGGCCGGAGGACGGTCTGCACGTCGCGTCCTTCCCCCGCCGTCTCCGCTCCCCTCGACCGCCGTCCTGCTCtgtccttccctctctctctctgtctctctctctccgtccgTGGCGGGTTGTCGGAACAGAAGACACGAGGGAAGCGATGCCCGTCTGGCTCTGGCACCGAGAGCCGTCACTGAATGTACCTTACAGGCCAAATAGGGCGAGGATTTTTATACTCTACTCATTTTTTGTGTCTCCCCCACCCCAGAAGGGACACAGACGCTGGGGGTGGGAACGGATttgtggggttgggggggggtgttgctATGTGTTTAAAAcctacaaaagcaaaaaattcCTCATCGAGGAGCGATTGTCCGACTGTCCTGCCGGCCTGGTCCTCTGGCCTCGGTGTGTGTGTCGAGGTATTTTTCGACGTGTTTATGGAAGAGCGAAGAAGAAAGGAAGACGGAAGGAATCACACTGGGGGCGTGGGGGGGTCTTTCAAACACTGAATTCCACTCGagacttatttttcttcctgaTATTTTTATTCTGTGCGCAAGGattttttccctcctcctcctcctcggtcTCTAGGCTCACTTTGTCGAGTGGTAGACGGCGGTACGCGTGTTCGAAGACACGGGAGGATGAAGTAACACGTATGTTAATATATTAGCGGTGAGTGAAGGCTACTGTCGTTAGGAATCGGATGATCTGTATATAGATGAAGGCTGTGTAGAGACGATTCCTGTcgcgtttgttttttttgttgcttttctcAATGATTTGTATGAACTGGAAATTGCTTTGTAATCTGTAAGCGAGTGAAATGCCTGGCACGAGAGAGACGAggaaggatggatggatggatggatggatggatggatggatggatcgTTAAAATATTTAAGCTGGGAGTTGTTCTTGACTGGGGGGTtataaaacagagaaacaaGACATACAAGACAGTGGACACAAGGTCCCGATTCCTGTCACCCTTCagagcagctgagagagagagtgttattATTGTGATAATGAAGATGATGTTTTGTCATCACTAAGCTGCTCCCCCGCTCGTCTCCAGCCCTGGCCCTCAGCCCCACAATCCTTCCTGTTTTGTTGACGTCTCTGCTCAGCGGTGACGCAGCCTGGTGGTCTGCACTAACAGGGCTGAGGAGTCGGGGGGCTGCCGGCCGTGTCACAGCGGCCCAGCGCAGGGGACAAGAAGTGAACAGGACACTGACGATGCGCTTCACTGGGGCCCCTTTCATTTAGTATCATTGATTCAATTTGATTTGAAGACGGAGCTGGTTGAAAGGCCCGAGCGCTGCAAGGCCTTCTGGGGTTTATCTGAATCATGAACTGCTTAATTGGGCCACCGATTATTAGGCTTAATTAGTCGAGTTCCTGGGATGGGAGGGGGCTAGCGATTGATGTGGACAGACCTGTGCAACCCGCAGGACTGTGACCCCCCACACGCACACGAATCGGCTGTCCTGTTCGCGTGGCTCCTGGAGTACAAACTCTGTCTCTCAAAATACACTAAAAGAGAGAAGATACAGATgcacacagaaaagaaaaaacttataaaaatgaatacattgaacCCTTCCTGTCGGCCCGAGTGCTCGGGCCCGCAGCGTGGGGGTGACCCTGCAGTGGACAGCAGCATCCTGGAGGGCCGGgggcagtgtgtgtttgtgttttcgcGGACTAGGCGGGAGGGGGTTGTGTGCAAGTGTGGTTCCTGGGGG

Function

GO: NA

KEGG:

id description
K17493 CAMSAP; calmodulin-regulated spectrin-associated protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61335 lncRNA upstream 74114 933145 ~ 936281 (+) True G49069
TU61332 lncRNA upstream 79568 929706 ~ 930827 (+) True G49066
TU61233 lncRNA upstream 226414 765871 ~ 783981 (+) False G48996
TU61232 lncRNA upstream 226414 782180 ~ 783981 (+) True G48996
TU61185 lncRNA upstream 259793 748598 ~ 750602 (+) True G48961
TU61376 lncRNA downstream 25250 1058561 ~ 1107290 (+) True G49101
TU61377 lncRNA downstream 30238 1063549 ~ 1068033 (+) True G49102
TU61371 lncRNA downstream 46710 1080021 ~ 1117780 (+) True G49097
TU61383 lncRNA downstream 53259 1086570 ~ 1087158 (+) True G49107
TU61386 lncRNA downstream 59410 1092721 ~ 1096634 (+) True G49110
AMCG00008431 mRNA upstream 15576 985977 ~ 994819 (+) True AMCG00008431
AMCG00008424 mRNA upstream 26739 976227 ~ 983656 (+) True AMCG00008424
AMCG00008423 mRNA upstream 42391 965880 ~ 968004 (+) False AMCG00008423
AMCG00008429 mRNA upstream 59553 947657 ~ 950842 (+) True AMCG00008429
AMCG00008419 mRNA upstream 167260 822678 ~ 843135 (+) True AMCG00008419
AMCG00008432 mRNA downstream 19284 1052595 ~ 1055755 (+) True AMCG00008432
AMCG00008433 mRNA downstream 42819 1076130 ~ 1078396 (+) True AMCG00008433
AMCG00008441 mRNA downstream 206053 1239364 ~ 1245755 (+) True AMCG00008441
AMCG00008445 mRNA downstream 224210 1257521 ~ 1260216 (+) True AMCG00008445
AMCG00008446 mRNA downstream 247317 1280628 ~ 1288082 (+) True AMCG00008446
TU61359 other upstream 41812 965838 ~ 968583 (+) True AMCG00008423
TU61256 other upstream 130882 876554 ~ 879513 (+) True G49013
TU61033 other upstream 421949 587280 ~ 588446 (+) True G48846
TU60995 other upstream 458489 550281 ~ 551906 (+) True G48811
TU60768 other upstream 842897 166958 ~ 167498 (+) False AMCG00008375
TU61499 other downstream 289500 1322811 ~ 1324269 (+) True G49208
TU61614 other downstream 897343 1930654 ~ 1936502 (+) True G49298
TU61588 other downstream 1058650 2091961 ~ 2105573 (+) False AMCG00008475
TU61627 other downstream 1094404 2127715 ~ 2143310 (+) True AMCG00008476
TU61670 other downstream 1176172 2209483 ~ 2211514 (+) True G49340

Expression Profile