RNA id: AMCG00008444


Basic Information

Item Value
RNA id AMCG00008444
length 2549
RNA type mRNA
GC content 0.53
exon number 11
gene id AMCG00008444
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 1315607 ~ 1322747 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTCCGAGGGGCTGCCAGGGAAGACGGGGCCGGTGGGGGCCCAGGGTCACCCAGGGAAGTATGGACCCCAGGGGCTGCGAGGCATCCCGGGACCAGCCggagaACAAGGGCTGAACGGCCCCCCAGGACAAACCGGCCCCCCAGGCCCGATGGGCCCCCCCGGTCTGCCCGGACTGAAAGGAGACCCTGGCAGGAAAGGTGACAAGGGCCACGCCGGACTCATCGGTCTGATCGGGCCCCCGGGAGAGATGGGGGAAAAAGGGGACCGAGGTCTGCCGGGGAACCAGGGCACCCAAGGGCCCAAAGGAGACGGGGGCCTCGTTGGCGGTGCTGGTCCCGATGGCCCCCCCGGACTCCCCGGCCTGCCTGGTCCTCTCGgggagaagagagagagagggagagagagagagagaggtatagATAATGGGTATCCAGGCTCAAGTAACATCTCCCCCCCGACACCAGGGTCCCCCGGCCACCATGATCGAGCCCCTCCCCCAGGAGGGCCGCAGGAAGCGCCGGCGCCACACGGGCGACATGGTGCAGGGAGACGTGGTGCAGGGAGACCAGCCGATGGAGGACGAAGCCGGCGGCATGGAGGAGGTGTTCGCCTCGCTCAACTCCATGAAGGCCGAGGTGGAGCACATGCGGAAGCCGCTCGGCACCCAGGAGAGCCCTGCCCGTACATGCAAAGAGCTGCAGATGTGCCACCCTGACTACAAAGACGGCGAGTACTGGATCGACCCGAACCAGGGCTGCCACCGCGACGCCCTCAAGGTGTTCTGTAACTTCACGGCCGAGGGCGAGACCTGCCTGTTCCCAGACAAGAAGGCGGAAGCGGTGAAGCTCGCCGCCTGGAATCGGGAGAAACCCGGCACCTGGTTCAGCCAATTCAAGAAAGGAAAGCAGtTCTCCTACATCGATTCGGAGGGCAACGCCGTGCAGGTGGTTCAGCTGACCTTTCTGAAGCTGCTGAGCGCCACAGCCCACCAGACCTTCACCTACAACTGCCAGAACTCGGCCGGCTGGTACGATAGCAGCTCCCGCAGCCACCAGCACGCGCTGCGCTTCCGTGGCGCCAACGACGAGGAGCTGTCCTTCGCCAAGACGCCCTTCATCAACGCCCTGTACGACGGCTGCCAGTCCCGGAAAGGTTACGAACGGACGGTTCTGGAGATCGACTCTCTGAGAGCCGACCTTCTTCCCATCACCGACGTCGCCGTCACAGACTTTGGCAGCAGCAACCAGAAGTTTGGGTTCGAGCTCGGCCGTGTTTGCTTCAACGGTTAAAGCCCCgggaatgaaaacaaagtagCCAcgtattttttaaagcaataagaCTTTTGTGATTGCCACAagcaatatttatatatctatttttttggttttgtttctaatCTGTGGTGGGTttgtggtatgtttttttttttttgcaagaaaCTAAAGAGAAATGGACAAACCACAGAGGTGAGGTCATTGTCATGTGACTTTGGAACATCCAATAGGATCGGAGCCGCCATGATCCGGTGACAAAGCAGCAACGTGATTGGACAATGCCCTGTGACGATTGGAAATGCACATTTGATAAAGGGAAACTCAACGAcgtatatttttcatttgttttttttgttttgttttttgtcctgtTTTCTGCTGATGTATAAAGTTTGCCTTTTCTCCATAAAGGAGAAATGTTCAGGGCTTCTCCAAAAATATTTTGGGTGGAAAGCTATAGTCAACTACATTAGATCTATGTTGATTTTACTTTCACAAGACAGAAAGAGCAAACGTCACGCGGCAGCAGAAGCTTGTGTTCCCATGTTTTTTGGCGTGACTGTTTGTATTACATTAACATAAAGCTCTTCTCAGAGTATCTCCCACCGGTACACAAACCTGTGTATCAAACTAAGACTTTATTAtcagcaaaacagaaacaaactaaaccTTTTTGGTGCTTGATTGCCTGCCGTCACCGATAACCGAAATACTCTCGGGCAAGGGGGTTAGACTTCAGGTATCCAGGGGGCACTGGCTGTTACTGGCCAATTAAgcatttaagtttaaattaattgattaatttttgactcatttaatgtctttttaaggtccaatacacacacaaaaaaacactaagtCTAGATACAGGCCATGTATATCTGTAAAAATGTGCATTACTCCAATTCAGATAAAGCAAAGACGTGAGAAGCCAGGAGATACTGTGGCACCCTCCCCGTCCCAGAGCTGCACAGTGGTTTACACGCTTGACCTGACCTTAAAGTGAGCGCCTTACTGGACCcgtttacaaacaaaacacaacctgCGACCAATAAGGACTGTAATGAGTAGGGCGTCAGCGTGGGAGAACGCTCTTAAGAATACAACTCCCAGGATTCAGATAAAGTGGACCTGACACTGACGGTACAACACTGCCTCAAGCAtccattgtactgtactgtctgctaaccttgctttttttttgctttttgttttcatgttattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO:

id name namespace
GO:0005581 collagen trimer cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61466 lncRNA upstream 152917 1162483 ~ 1162690 (+) True G49178
TU61371 lncRNA upstream 197827 1080021 ~ 1117780 (+) True G49097
TU61386 lncRNA upstream 218973 1092721 ~ 1096634 (+) True G49110
TU61383 lncRNA upstream 228449 1086570 ~ 1087158 (+) True G49107
TU61377 lncRNA upstream 247574 1063549 ~ 1068033 (+) True G49102
TU61514 lncRNA downstream 183966 1506713 ~ 1506935 (+) True G49221
TU61523 lncRNA downstream 302650 1625397 ~ 1628333 (+) True AMCG00008451
TU61528 lncRNA downstream 307193 1629940 ~ 1631543 (+) True G49233
TU61531 lncRNA downstream 319683 1642430 ~ 1741577 (+) True G49236
TU61564 lncRNA downstream 477114 1799861 ~ 1856256 (+) True G49261
AMCG00008446 mRNA upstream 27525 1280628 ~ 1288082 (+) True AMCG00008446
AMCG00008445 mRNA upstream 55391 1257521 ~ 1260216 (+) True AMCG00008445
AMCG00008441 mRNA upstream 69852 1239364 ~ 1245755 (+) True AMCG00008441
AMCG00008433 mRNA upstream 237211 1076130 ~ 1078396 (+) True AMCG00008433
AMCG00008432 mRNA upstream 259852 1052595 ~ 1055755 (+) True AMCG00008432
AMCG00008447 mRNA downstream 121430 1444177 ~ 1444458 (+) True AMCG00008447
AMCG00008449 mRNA downstream 149941 1472688 ~ 1473983 (+) True AMCG00008449
AMCG00008448 mRNA downstream 162263 1485010 ~ 1486403 (+) True AMCG00008448
AMCG00008450 mRNA downstream 174474 1497221 ~ 1506574 (+) True AMCG00008450
AMCG00008451 mRNA downstream 302547 1625294 ~ 1628071 (+) False AMCG00008451
TU61359 other upstream 347024 965838 ~ 968583 (+) True AMCG00008423
TU61256 other upstream 436094 876554 ~ 879513 (+) True G49013
TU61033 other upstream 727161 587280 ~ 588446 (+) True G48846
TU60995 other upstream 763701 550281 ~ 551906 (+) True G48811
TU60768 other upstream 1148109 166958 ~ 167498 (+) False AMCG00008375
TU61499 other downstream 64 1322811 ~ 1324269 (+) True G49208
TU61614 other downstream 607907 1930654 ~ 1936502 (+) True G49298
TU61588 other downstream 769214 2091961 ~ 2105573 (+) False AMCG00008475
TU61627 other downstream 804968 2127715 ~ 2143310 (+) True AMCG00008476
TU61670 other downstream 886736 2209483 ~ 2211514 (+) True G49340

Expression Profile