RNA id: AMCG00008445


Basic Information

Item Value
RNA id AMCG00008445
length 1245
RNA type mRNA
GC content 0.58
exon number 5
gene id AMCG00008445
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 1257521 ~ 1260216 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGATCTTGAGGTTGGAAGATAGGCAGTGGACACGGGGGTCCTTTGGGGATCTGAGTTTGAGAACCCTGGGAGAGAGAACCCAGGAACCCATCTGTTTCCGTTCATTCCTGTTCTCTCCCTACCCTCTCTCGCGCTCTCTTGTGTTTTACCATttcttgttctgttttcttCATGTCCCATCCTCTCCCTACCAACGACAATCCCCGCCCTTCTCCGTCCCCGTGCAGAAAGGGTCAGAGCCCCCCCCCAACGACGAGCCGGATGAAAAACCCCAAAAACGTGACCGACAAGACAGGAAGGCCAAATCCAAGAAGAACAGGGACAGGTCCTCTAAGAAGAAGGGCAGGAAGGAGTCtaggaagaagagaaaagaggaCCCTGGGCCCGAGGAGGGGTTTTTAGAGGTGGTCACGGCATTGCCTGAATATTTTTATGAGGGACCTCTGGAAAACACCACATTCCCTAAGACAGATGAGGCCCCTTGGGAGTCCACTGCCCTGCCTGAGTCAACACAGGACCCGCTTTCGCTCCCTTGGGAGTCCACTGCCCTGCCTGAGTCAACACAGGACCCCTCTTTGCCCCCTTGGGAGTCCACCGCCCTGCCTGAATCAACACATGACCCCCTTTCACTCCCTTGGGAGTCCACCGCCCTGCCTGAGTCAACACAGGACCCCTCTTTGCCCCCTTGGGCGTCCACAACCCTGCCTGAGTCAACACAGAACCCTTCTTTGCTGTCCACTTCCCTGCCCGTACCAACTCTAGAAGTCTCTCTGGCATCCGTGTCGCTGCCCGAATCCACTTTTGAGACCCTCGTGGTGTCCACGCTGCTGCCTGACTCCCCAGTGACCGGGGAAGAGGTGGAGAAGCCGGTGAAGGAGCCAGAGGTGGAGGACTTCAACGAGGACTACTACAACGCGCTCTACGAGGACCTCGACGTCTCCACCGTGACCGTAGGGCCCAACGTCACGGAGTATGAGGTCGTGGAGTACGAGGACGGGAGCCCCCCCGACCGGCAGCCGGAGGTGCAGGAGTACGAGGTGCAGGAGTACGAGGAATACGAGGAGTACGACGACCGCTACGGCTGGGTGGAGAGGGAGGACGCCGAGACCAGGGATGTGCAGGAAAGGTTGCAGAGACCGGAGAAGGGAGAGAAGGGAGAACCCGCGATTATTGAACCAGGGATGTTGGTGCAGGGACCCCCGGGACCACCCGGTCCAGAGGTGAGTGAGCGTCCCGTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61466 lncRNA upstream 94831 1162483 ~ 1162690 (+) True G49178
TU61371 lncRNA upstream 139741 1080021 ~ 1117780 (+) True G49097
TU61386 lncRNA upstream 160887 1092721 ~ 1096634 (+) True G49110
TU61383 lncRNA upstream 170363 1086570 ~ 1087158 (+) True G49107
TU61377 lncRNA upstream 189488 1063549 ~ 1068033 (+) True G49102
TU61514 lncRNA downstream 246497 1506713 ~ 1506935 (+) True G49221
TU61523 lncRNA downstream 365181 1625397 ~ 1628333 (+) True AMCG00008451
TU61528 lncRNA downstream 369724 1629940 ~ 1631543 (+) True G49233
TU61531 lncRNA downstream 382214 1642430 ~ 1741577 (+) True G49236
TU61564 lncRNA downstream 539645 1799861 ~ 1856256 (+) True G49261
AMCG00008441 mRNA upstream 11766 1239364 ~ 1245755 (+) True AMCG00008441
AMCG00008433 mRNA upstream 179125 1076130 ~ 1078396 (+) True AMCG00008433
AMCG00008432 mRNA upstream 201766 1052595 ~ 1055755 (+) True AMCG00008432
AMCG00008430 mRNA upstream 224210 1010395 ~ 1033311 (+) True AMCG00008430
AMCG00008431 mRNA upstream 262702 985977 ~ 994819 (+) True AMCG00008431
AMCG00008446 mRNA downstream 20412 1280628 ~ 1288082 (+) True AMCG00008446
AMCG00008444 mRNA downstream 55391 1315607 ~ 1322747 (+) True AMCG00008444
AMCG00008447 mRNA downstream 183961 1444177 ~ 1444458 (+) True AMCG00008447
AMCG00008449 mRNA downstream 212472 1472688 ~ 1473983 (+) True AMCG00008449
AMCG00008448 mRNA downstream 224794 1485010 ~ 1486403 (+) True AMCG00008448
TU61359 other upstream 288938 965838 ~ 968583 (+) True AMCG00008423
TU61256 other upstream 378008 876554 ~ 879513 (+) True G49013
TU61033 other upstream 669075 587280 ~ 588446 (+) True G48846
TU60995 other upstream 705615 550281 ~ 551906 (+) True G48811
TU60768 other upstream 1090023 166958 ~ 167498 (+) False AMCG00008375
TU61499 other downstream 62595 1322811 ~ 1324269 (+) True G49208
TU61614 other downstream 670438 1930654 ~ 1936502 (+) True G49298
TU61588 other downstream 831745 2091961 ~ 2105573 (+) False AMCG00008475
TU61627 other downstream 867499 2127715 ~ 2143310 (+) True AMCG00008476
TU61670 other downstream 949267 2209483 ~ 2211514 (+) True G49340

Expression Profile