RNA id: AMCG00008446


Basic Information

Item Value
RNA id AMCG00008446
length 1428
RNA type mRNA
GC content 0.64
exon number 18
gene id AMCG00008446
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 1280628 ~ 1288082 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCTCCCCGAGATTACCGCGTCCTCGGTGGAGCGTTCTGTGACCCCTCTGCTCTGTTCTGCAGGGTTCCCGTGGACTGGTTGGGCCCCGAGGATCCCCCGGACCTCCAGGACAGCCGGGACCACCAGGTGAGCCTGGCCCCTCCGGGACTGCCTGGCCCTCAAGGCACCATAGGAATGCCCGGAGAAAAGGGTCCCCAAGGCAAGCCCGGCCTCCAGGGACTTCCAGGCATGGACGGCCCGGCGGGTCACCCTGGCAGAGAAGGACCACCTGGAGAAAAGGGGATTGTGGGTCCTTCAGGAGCACAGGGTCCCATTGGCTACCCTGGAACCCGTGGTGTGAAGgGGGCTGACGGAGTGCGAGGCCTGAAAGGGAACAAGGGGGAGAAGGGTGAAGATGGGTTCCCCGGGTTCAAAGGAGACATGGGCCTGAAGGGAGACAGGGTGAGTCCCCGTCCGAAACCCTACGCCCCAGACCAGGGGTCGCTCAGAGGTCAGAGGAGGGCTGAGGCCACCAGCCTGTCAACATCAAGAGAGCGGACTGGGTTTCAGAACCACACTTGTGGCGATGTGGGAGTGATCGGGACCCGGGGGGAGGACGGACCGGAGGGGCCCAAGGGACAGTCCGGGCCCCTGGGGGAGTCCGGGCCCATGGGCACGGCAGGAGAGAAGGGGAAACTCGGGGTGCCGGGATTGCCAGGGTATCCGGGTCGACAGGGAACCAAGGGCTCCGTGGGGTTCCTCGGTGCTGCGGGAGTGGCTGGAGAGAAAGGAAAGAGGTCCCTCACAGCGGTGTCTCATAAGACGCCCACAGACTTTGACACCCTGGGGAATCTGATCCGCCTTATGTTTTCGCTCCAGCGGTTTCGGTTCCCCCTAGTGGTCCGGCGGGGCAGCCAGGGACTGGTGGACAGAGAGGACCCACGGGCTCAGCTGGTCACGATGGCCCGTCCGGACCCACAGGAGAGCGGGGACCGCAAGGCCCGCAGGGACGCAACGGGGAGGCCGGACCCAAAGGGCCGAATATCAATATGTGCTATTACCATCATTGTTATTATcgtctgtattattattgctgtgcgTGTGGAAGTGTGGGCGACGGCGGACGCACGCTGCGCTGTAACGTGTCTCGTGTCGCTTCTCAATGCTGTGCAGGGGCCGGCCGGGAAGGACGGGCTGCCGGGACATCCGGGCCAGAGGGGGGAGCCGggtttCCAAGGCAAGACTGGGCCTCCCGGACCGACTGGAGTGGTGGGACCGCAGACCGAGTCCTTCTCGTCTGTTTCTGGGGGCTTCTCGATGGCAGTTCCCTTCGACCGCCCTTCGGGGGTTCTGAAGGCGCTGAGCCCAGCCTCGGACCCGTGGGCTCGCTGGGGAACGGAGCAGTGTGGTGGGGTTTGGGCTGTACTGGCCGATCAGAAGCCGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61466 lncRNA upstream 117938 1162483 ~ 1162690 (+) True G49178
TU61371 lncRNA upstream 162848 1080021 ~ 1117780 (+) True G49097
TU61386 lncRNA upstream 183994 1092721 ~ 1096634 (+) True G49110
TU61383 lncRNA upstream 193470 1086570 ~ 1087158 (+) True G49107
TU61377 lncRNA upstream 212595 1063549 ~ 1068033 (+) True G49102
TU61514 lncRNA downstream 218631 1506713 ~ 1506935 (+) True G49221
TU61523 lncRNA downstream 337315 1625397 ~ 1628333 (+) True AMCG00008451
TU61528 lncRNA downstream 341858 1629940 ~ 1631543 (+) True G49233
TU61531 lncRNA downstream 354348 1642430 ~ 1741577 (+) True G49236
TU61564 lncRNA downstream 511779 1799861 ~ 1856256 (+) True G49261
AMCG00008445 mRNA upstream 20412 1257521 ~ 1260216 (+) True AMCG00008445
AMCG00008441 mRNA upstream 34873 1239364 ~ 1245755 (+) True AMCG00008441
AMCG00008433 mRNA upstream 202232 1076130 ~ 1078396 (+) True AMCG00008433
AMCG00008432 mRNA upstream 224873 1052595 ~ 1055755 (+) True AMCG00008432
AMCG00008430 mRNA upstream 247317 1010395 ~ 1033311 (+) True AMCG00008430
AMCG00008444 mRNA downstream 27525 1315607 ~ 1322747 (+) True AMCG00008444
AMCG00008447 mRNA downstream 156095 1444177 ~ 1444458 (+) True AMCG00008447
AMCG00008449 mRNA downstream 184606 1472688 ~ 1473983 (+) True AMCG00008449
AMCG00008448 mRNA downstream 196928 1485010 ~ 1486403 (+) True AMCG00008448
AMCG00008450 mRNA downstream 209139 1497221 ~ 1506574 (+) True AMCG00008450
TU61359 other upstream 312045 965838 ~ 968583 (+) True AMCG00008423
TU61256 other upstream 401115 876554 ~ 879513 (+) True G49013
TU61033 other upstream 692182 587280 ~ 588446 (+) True G48846
TU60995 other upstream 728722 550281 ~ 551906 (+) True G48811
TU60768 other upstream 1113130 166958 ~ 167498 (+) False AMCG00008375
TU61499 other downstream 34729 1322811 ~ 1324269 (+) True G49208
TU61614 other downstream 642572 1930654 ~ 1936502 (+) True G49298
TU61588 other downstream 803879 2091961 ~ 2105573 (+) False AMCG00008475
TU61627 other downstream 839633 2127715 ~ 2143310 (+) True AMCG00008476
TU61670 other downstream 921401 2209483 ~ 2211514 (+) True G49340

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00002770 True 3938 mRNA 0.61 52 NC_007112.7 59260093 ~ 59287507 (-)
grasscarp (Ctenopharyngodon idella) CI01000174_00229653_00259356.mRNA True 5389 mRNA 0.56 51 CI01000174 229653 ~ 259739 (+)