RNA id: AMCG00008450



Basic Information


Item Value
RNA id AMCG00008450
length 1095
RNA type mRNA
GC content 0.60
exon number 3
gene id AMCG00008450
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 1497221 ~ 1506574 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGTCCGTCAGCTGGCCCGTGACAGTGAGGCAGTTGAATTGGACTGGAGACCCCTCTGTAACGCTGTCTGCTCTTGTCTGTGGTTCCAGGAGCTGAAGGACAAGGTGACCGAGGTGCTGCCCATGCTGCCGGTGCTGGAGCAGTACAAGACAGACGCGCGCATGATCGTCCGGCTGAAGGAGGAGGTGCGCAACCTCTCCATGGTGCTACTGGCCATCCAGGAGGAGATGGGGGCCTACGACTACGAGGAGCTGCAACAGAGGGTCCTGCTGCTGGAGTCCCGGCTCCACGCCTGCATGCAGAAGCTCGGCTGTGGGAAGCTGACGGGGGTTAGTAACCCAATCACCATCCGCGCCTCGGGGTCCCGGTTTGGCTCCTGGATGACGGACACCATGATCCCCAGCTCGGACAATCGGGTGTGGTCCATGGACGGCTACTACAAGGGCCGGCGCGTCCTGGAGTACCGCACCCTGAACGACTTCATGAAGGGTCAGAACTTCGTGCAGCACCTGCTCCCGCACCCCTGGGCCGGCACGGGCCACGTGGTCTACAACGGCTCGCTGTACTACAACAAGTACCAGAGCAACATCGTCATCAAGTACCACTTCCGCTCGCGCAGCGTCCTGGTGCAGCGCAGCCTGAACGGCGCCGGCTACAACAACACCTTCCCCTACTCCTGGGGCGGCTCGTCCGACATCGATCTCATGGCGGACGAGAACGGGCTTTGGGCCGTCTACACCACCATCCAGAACGCCGGCAACATCGTGATCAGCCGCCTGGAGCCACAGAGCCTGGAGATCCTGCAGACGTGGGACACGGGCTACCCCAAGCGCAGCGCCGGTGAGTCGTTCATGATCTGCGGGACGCTCTACGTGACCAACTCACACCTGGCCGGGGCCAAGATCTACTTTGCCTACTACACAAACTCCTCCAGCTACGAGTACACGGACATCCCCTTCCACAATCAGTACTCGCACATATCCATGTTGGACTACAACCCGCGCGAGAGGGTGCTGTATACTTGGAACAATGGCCACCAAGTGCTCTACAACGTCACGCTTTTCCACGTCATAAAGACTTCGGGAGACGCGTAA

Function


GO:

id name namespace
GO:0014032 neural crest cell development biological_process

KEGG:

id description

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU61466 lncRNA upstream 334531 1162483 ~ 1162690 (+) True G49178
TU61371 lncRNA upstream 379441 1080021 ~ 1117780 (+) True G49097
TU61386 lncRNA upstream 400587 1092721 ~ 1096634 (+) True G49110
TU61383 lncRNA upstream 410063 1086570 ~ 1087158 (+) True G49107
TU61377 lncRNA upstream 429188 1063549 ~ 1068033 (+) True G49102
TU61514 lncRNA downstream 139 1506713 ~ 1506935 (+) True G49221
TU61523 lncRNA downstream 118823 1625397 ~ 1628333 (+) True AMCG00008451
TU61528 lncRNA downstream 123366 1629940 ~ 1631543 (+) True G49233
TU61531 lncRNA downstream 135856 1642430 ~ 1741577 (+) True G49236
TU61564 lncRNA downstream 293287 1799861 ~ 1856256 (+) True G49261
AMCG00008448 mRNA upstream 10818 1485010 ~ 1486403 (+) True AMCG00008448
AMCG00008449 mRNA upstream 23238 1472688 ~ 1473983 (+) True AMCG00008449
AMCG00008447 mRNA upstream 52763 1444177 ~ 1444458 (+) True AMCG00008447
AMCG00008444 mRNA upstream 174474 1315607 ~ 1322747 (+) True AMCG00008444
AMCG00008446 mRNA upstream 209139 1280628 ~ 1288082 (+) True AMCG00008446
AMCG00008451 mRNA downstream 118720 1625294 ~ 1628071 (+) False AMCG00008451
AMCG00008455 mRNA downstream 204543 1711117 ~ 1716867 (+) True AMCG00008455
AMCG00008454 mRNA downstream 211598 1718172 ~ 1737515 (+) True AMCG00008454
AMCG00008459 mRNA downstream 288237 1794811 ~ 1795802 (+) True AMCG00008459
AMCG00008461 mRNA downstream 289770 1796344 ~ 1801758 (+) True AMCG00008461
TU61499 other upstream 172952 1322811 ~ 1324269 (+) True G49208
TU61359 other upstream 528638 965838 ~ 968583 (+) True AMCG00008423
TU61256 other upstream 617708 876554 ~ 879513 (+) True G49013
TU61033 other upstream 908775 587280 ~ 588446 (+) True G48846
TU60995 other upstream 945315 550281 ~ 551906 (+) True G48811
TU61614 other downstream 424080 1930654 ~ 1936502 (+) True G49298
TU61588 other downstream 585387 2091961 ~ 2105573 (+) False AMCG00008475
TU61627 other downstream 621141 2127715 ~ 2143310 (+) True AMCG00008476
TU61670 other downstream 702909 2209483 ~ 2211514 (+) True G49340
TU61936 other downstream 1259305 2765879 ~ 2770044 (+) True G49523

Expression Profile



Homologous


species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00050636 False 1928 mRNA 0.51 6 NC_007114.7 54168007 ~ 54237556 (+)
grasscarp (Ctenopharyngodon idella) CI01000113_00770409_00789987.mRNA True 2658 mRNA 0.49 8 CI01000113 770133 ~ 790683 (-)