RNA id: AMCG00008454


Basic Information

Item Value
RNA id AMCG00008454
length 2370
RNA type mRNA
GC content 0.64
exon number 14
gene id AMCG00008454
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 1718172 ~ 1737515 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAACAATCGCTCCATCTCCTGGTGGCTTGGTCAGATAGGACTTCCCCAGTACACCAGGACCCTGGAGAGAGAGTATTATGGGTTGGAGGGGTTGATGCAAGTGACTGATGGAGACTTGAAGGAGGCCGGGATCCAGAGCCAGGAAGATCGGGCGACCATCCTGTACCACctgaggcagcagcagcagcaggacgaACCAGCCCCAGGAAGCCCTACTGCCCCCCCTCAGGGCAGAGTGACCCGGAAACACTCGCTGGGGTCCTCCATAGACTTGGTGGGGTCGTCCGGCAAACGTCTGTCCAGCCACAGTCTGGGCCTTTTCCGCCAAAGTGTCCTGCCGCGACTCCGCCGGAGAGACAAGGCGGCGTTCTCCTCCTGCTCCCAGCTCAGCACCCTGGAGGAGAGCCTCTCACCTGGCCCAGCCCCCCACCACGGCAAGAAGGACACCCTCCAGCCTGGACAGTCCGCCACGCTGCCTCGCAAAGGAACCCAGAGtaaacGGAAGAGTGTGGGCGTGTATTTAAGCAACTTGAAGCTGTTTGGGGGCAAGGGAGGGATGGACACGGGCAAAGACACCCTGaagaaggagctggaggaggagctgaaGCTGAGCACGGATGACCTGCGGAGTCACGCCTGGTACCATGGGCAGATCCGGAGAGAGGCCGCGGAAAGCTTGGTGGAGAAAGACGGTGATTTCTTGATCCGTGACTCCCAGTCCAGCACAGGGGACTATGTGCTGACCTGCCGGTGGAAGGAGCAGCCCATTCACTTCAAGATCATCCGGGTGGTGTTGAGGCCCAAGAAGGGCTATTCACGCGTGCTGTTCCAGTTTGAGCAGGACCAGTTCGACAATGTGCCTGCTCTGGTCCGCTTCCAAGTGGGCAGTCGCAAGGCCATTTCCGATGCCTCGGGTGCCATCATCAGCCGCCCTGTCAACCGCACCCTGCCGCTGCGCCTCACTGGTGGGCAGCAGGACCACAGCGCCCCACAGAGGGCCAGCACGGACCAGCTCTCTGCCTGGGCAACCCTGCCCAGCAGCACAAAGAGACTCAGCCTGAACACCAACCCGGCCGAGATGGCCCTCAGCAACGGCAACCTTCTCAGGAACAAGGACAAGAGTGGCAGCCACCCGGCCAGCCTGGAGAACCTGGGCCGGAGACCCTCGATGCAGAGCTCGCAGTCCGACAGCAACCTGCGCACAGATGGGCAGCTACACTCCCGGGCGCCCCCGAAGCCCCTGCGCGTCTCGACCATCTTCCCAATCCCTCCGGCCAGCTGGACCCCAGACGACGACCCCTACGGCGAGTACGGGGAGCTGGTCCCCAGGGCGCCCATCCTGTCCCGGGGCCACGTGGACAGACTGAGGGCGGAGGAGAAGTGGCAGAGCCGGGCGCGGATAACGGAGACCAGCTTCGGGTTCCTGGACTCCGGGCTTTCCGTGGTGTTcccggggggagggggggacgTGATCGCGGAGGAGGACGACGGCCCACCTGACGGGGAGCCCCACTTCGTCCGGCCCCAGGTCGAGACCAGGTCGTGTTTCCGCCTCAACCTCTTTCAGTCGCTCCTGCTGCCAGACAACAACAGGCCGCTGGAGCCCGGTGTGGCGCGCATTACCGCCGTGACGGAGGAGCAGCAGAGGCTCATGGGAGTGAGCTCGGGGCTGGAGCTGATCACGCTGCCACACGGGCAGCAGCTGAGGAAGGACCTGCTTGAGAGGCACCACCTGATCGCACTGGGCATCGCCATCGACATCCTGGGCTGCACAGGCACGGTGGGCCAGCGGGCCGGGGTGCTGCACAAGGTGATCCAGCTGGCGAATGAGCTGAGGCAGACGGCCGGCGATCTGTTCGCGTTCTCCGCTGTCATGAAGGCCCTGGAGCTGCCCCAGGTGCACCGGCTGGAGATGACCTGGCGGGCTTTGAGGAGGAACCACACAGAGAGCGCCATCGACTTTGAGAAGAAACTCAAGCCCTTCATGAAAGCGCTCAACGAGGGCAAAGCCGAGACACCTCTGACCAGCATAGCGCTGCCACACATCCTGCCCCTGCTGAAAGTGATGGAGGGGCTGGACCTGGGCGAGCACACGGAACAGGGCTGTGAACTGCTGCTGTGCACCCTGGGGGCGGCCCGCACCATCTGCCTCAACACCAGCCAGTACCAGACCCGGGCCCAGACGCTGCTCTCAGGCTGGGAGCCGATCCCCGAGCTGCTGGAGGCCTTCCGCACCGAGTTCGCGCTTCGCCTCTTCTGGGGACAGAAGGGTGCAGAGGTGGCGCAGAAGGAGCGCTACGAGAAGTTCGACCGGATCCTCGATGTGCTGTCGAACAAACTGGAGCCGGCGGAGGCCCTCGCATCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61528 lncRNA upstream 86629 1629940 ~ 1631543 (+) True G49233
TU61523 lncRNA upstream 89839 1625397 ~ 1628333 (+) True AMCG00008451
TU61514 lncRNA upstream 211237 1506713 ~ 1506935 (+) True G49221
TU61466 lncRNA upstream 555482 1162483 ~ 1162690 (+) True G49178
TU61386 lncRNA upstream 621538 1092721 ~ 1096634 (+) True G49110
TU61564 lncRNA downstream 62346 1799861 ~ 1856256 (+) True G49261
TU61567 lncRNA downstream 66310 1803825 ~ 1806027 (+) True G49264
TU61576 lncRNA downstream 78069 1815584 ~ 1848738 (+) True G49270
TU61582 lncRNA downstream 100671 1838186 ~ 1839004 (+) True G49271
TU61609 lncRNA downstream 171308 1908823 ~ 1910419 (+) True G49294
AMCG00008455 mRNA upstream 1305 1711117 ~ 1716867 (+) True AMCG00008455
AMCG00008451 mRNA upstream 90101 1625294 ~ 1628071 (+) False AMCG00008451
AMCG00008450 mRNA upstream 211598 1497221 ~ 1506574 (+) True AMCG00008450
AMCG00008448 mRNA upstream 231769 1485010 ~ 1486403 (+) True AMCG00008448
AMCG00008449 mRNA upstream 244189 1472688 ~ 1473983 (+) True AMCG00008449
AMCG00008459 mRNA downstream 57296 1794811 ~ 1795802 (+) True AMCG00008459
AMCG00008461 mRNA downstream 58829 1796344 ~ 1801758 (+) True AMCG00008461
AMCG00008458 mRNA downstream 136522 1874037 ~ 1880962 (+) True AMCG00008458
AMCG00008460 mRNA downstream 146852 1884367 ~ 1889767 (+) True AMCG00008460
AMCG00008468 mRNA downstream 153581 1891096 ~ 1894227 (+) True AMCG00008468
TU61499 other upstream 393903 1322811 ~ 1324269 (+) True G49208
TU61359 other upstream 749589 965838 ~ 968583 (+) True AMCG00008423
TU61256 other upstream 838659 876554 ~ 879513 (+) True G49013
TU61033 other upstream 1129726 587280 ~ 588446 (+) True G48846
TU60995 other upstream 1166266 550281 ~ 551906 (+) True G48811
TU61614 other downstream 193139 1930654 ~ 1936502 (+) True G49298
TU61588 other downstream 354446 2091961 ~ 2105573 (+) False AMCG00008475
TU61627 other downstream 390200 2127715 ~ 2143310 (+) True AMCG00008476
TU61670 other downstream 471968 2209483 ~ 2211514 (+) True G49340
TU61936 other downstream 1028364 2765879 ~ 2770044 (+) True G49523

Expression Profile