RNA id: AMCG00008458


Basic Information

Item Value
RNA id AMCG00008458
length 2361
RNA type mRNA
GC content 0.57
exon number 11
gene id AMCG00008458
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 1874037 ~ 1880962 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCCCGTGACGCGCAGCGCATTTCCTGTGACGCACCGGAAGCGCATGGCGCGGCTGCAGCGTGTGAGCGGAGGGAGACGGAGCGCTATGGCGAGACACAGTTCCTGTACATTCAaagatttcttatttatttaacatcacTATCGTTTCgcttattttgtattaagacAACAACAACCTTTAGCCATGGGGAAAAGTAAGACAAAGAACCAGAAGAAGTCTCGGCAGAACGCCCTCCATGTGGCCCAGGAGGAGTACAGCTCGGTCCCGCACTCGTTCGTCTTCCACCGGGGCCACATCGGCAAGAACGTGGAGCAGCTGGTGCGCAAGAAGAACGTACTGAAAGACTTCGTTGCCGTGGCGGGACCGCTTGGGGTGACGCACTTCCTAATCTTCGGCAAGTCGCCCTCCAGCATCGGCCTGAGACTTGCCCGTCTGCCCAAAGGCCCGATGCTCCACTTCCGCGTTCTGAAGTACGCCCTGATCAAGGATGTGGTGTCGTCCGTGAAGCGCCACCGGATGCACGAGGAGCAGTTCACGCACCACCCCCTCCTGATCCTCAACAACTTCGGGGTGGAGGGCATGCACGTGAATCTCAACAGCATCAAGAGGTGCGTCTTGATCAACTACGACCCCAAGACCCAGTCCATTGAGTTCCGACACTACAGTGTGAAGGTGGTTCCTGTGGGCATGAGCCGGGGGGTGAAGAAGCTCATGCAGGAGAAGCTTCCCAACATGGGCCGATTCGAGGACATCAGCGAGCTGCTCATGAAGGGGGCCAACCTGTCGGAGAGCGAGGCGGAGCAGGACGGGGATCACAACATCACGGAGCTGCCGCAGGTGTACGCCGGCCGCGGTAACATGAAGGCCCAGCAGAGCGCCGTGCGGCTCACCGAGATCGGCCCCAGGATGACCCTGCAGCTGATTAAAATTGAGGAAGGCATGGGCGAAGGCAATGTGATGTACCACGCTGTCGGTAAGTGGCAGCGGAGTCTGGAGGGAATCcggaggaggaaggaggagcAGGGCAAGGGCGACGACAGCGAGGTGGAGGATCCCGGCACGCAGGAGGACAAGCCGGCGCTGGACGAGGAGTCTGACGAAGAGGCCAACTACTACAGGGAGGCCGTGGGGGAGGAGCCGGACGAAGACATGTTCCCAGACGCCTCCAAGCGGAAGCGGAGGAGGGCTGAAGGGAAGCCCCACAATCCCTTCAAGAAAAGGAAGTTCTCCGCGGAGAGAGGGGACAAGGCGGGCCGAGACCCCGCCCGGGAGGGACCATCCAAGAGGGGCCCGAAATACGGCAAGGGCTCCCCGGGGCAAGGCAGGGGCAAGGCCGAGCGGGGACGGGCGGGCGACGGGGCACCGGGGAAGCGGCACCAAAGGCAGGGGGAGAGGAAGTTtggagaggagaagaggaacAAGTTTGGGGGGAAGAAGTTCGGGGGGAAGACGACCCCGGGGGCGGCGAAGGGACTGAAGTTCAAGGGGCAGAAGGGGAAGCCTCGACCGGGGTTGAAGGGAAAGGGGCAGAGCAAGGCGAGGCCTGGGGGGAAACCAGGATTCAAGCAGAGAAAGGGTAAAGGCAGGCCGTAGGCCTCGGGTGAGGAAGTCTGTCTAGTGTGGAGGACCTCTCGACGCTGGTACTGCATTGGCAGGATGTAACAGATTCTTATCGAGGCCGTCTCTTGCACAAATAGTGACGAGCCGGAGCTGCCGGCTGAGTCTTAGCGGTGCAGTCGGCTGCCATGGTCCTGGAAGCAGCTTGTGTGGGTTTGGGGGTTTTGGTGAGGAGGCGGTATCTCGGTCCAGGTGCGGGTGAAGCATGTGACGGGGAAGTGACTGACGAAGGTTAGTCTGAGCTTGATGTTCATGATACGAAAGAACCCGTTTTGCAAAGCATAGTTCAGGGAGACCTACAGAGATGTCTGGAATTAGCCCCCCTCCATACTGCTCAGTCACCGGTGTAAAACCCACTCTGCCGATATAAGAGGTGTACATTGTTTTTTCCTAGAAGACCACGTGCTTGGAGTGTCCTTTTTCTAAGCGTCTAAAGTTCAGTTTCAGTTCGTCTGCCGTTTCCTTAAACTGCTTGTTTTTATTGCGCAGGGTCAGCTGTGCTCTTTGGCCCGACTGGGTCTAATTCAAAGCCTGTCTGGTTCTTGTTCAGTTGCCAGGAACAGTGCTGTGGTTTCATGTTCGATATCTGTTTCCTGCACGGTGCTCTCAGTAAACCCAGAAAGCTGATTGTTCCTCTCCTGTCACTTCTGTATTCCtccagtgtttttgtgtatacATGCTGTACAGATGCAGATAAAGTTAATGTTAAAGTtttgtacaataaaatgttgaacCAAAAAAA

Function

GO: NA

KEGG:

id description
K14859 SSF1_2; ribosome biogenesis protein SSF1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61564 lncRNA upstream 17781 1799861 ~ 1856256 (+) True G49261
TU61576 lncRNA upstream 25299 1815584 ~ 1848738 (+) True G49270
TU61582 lncRNA upstream 35033 1838186 ~ 1839004 (+) True G49271
TU61567 lncRNA upstream 68010 1803825 ~ 1806027 (+) True G49264
TU61531 lncRNA upstream 132460 1642430 ~ 1741577 (+) True G49236
TU61609 lncRNA downstream 27861 1908823 ~ 1910419 (+) True G49294
TU61586 lncRNA downstream 187095 2068057 ~ 2075649 (+) True AMCG00008473
TU61648 lncRNA downstream 282357 2163319 ~ 2208477 (+) True G49321
TU61672 lncRNA downstream 331467 2212429 ~ 2213493 (+) True G49341
TU61817 lncRNA downstream 564223 2445185 ~ 2464667 (+) True G49431
AMCG00008461 mRNA upstream 72279 1796344 ~ 1801758 (+) True AMCG00008461
AMCG00008459 mRNA upstream 78235 1794811 ~ 1795802 (+) True AMCG00008459
AMCG00008454 mRNA upstream 136522 1718172 ~ 1737515 (+) True AMCG00008454
AMCG00008455 mRNA upstream 157170 1711117 ~ 1716867 (+) True AMCG00008455
AMCG00008451 mRNA upstream 245966 1625294 ~ 1628071 (+) False AMCG00008451
AMCG00008460 mRNA downstream 3405 1884367 ~ 1889767 (+) True AMCG00008460
AMCG00008468 mRNA downstream 10134 1891096 ~ 1894227 (+) True AMCG00008468
AMCG00008472 mRNA downstream 149826 2030788 ~ 2046937 (+) True AMCG00008472
AMCG00008473 mRNA downstream 181594 2062556 ~ 2072046 (+) False AMCG00008473
AMCG00008475 mRNA downstream 207518 2088480 ~ 2107792 (+) True AMCG00008475
TU61499 other upstream 549768 1322811 ~ 1324269 (+) True G49208
TU61359 other upstream 905454 965838 ~ 968583 (+) True AMCG00008423
TU61256 other upstream 994524 876554 ~ 879513 (+) True G49013
TU61033 other upstream 1285591 587280 ~ 588446 (+) True G48846
TU60995 other upstream 1322131 550281 ~ 551906 (+) True G48811
TU61614 other downstream 49692 1930654 ~ 1936502 (+) True G49298
TU61588 other downstream 210999 2091961 ~ 2105573 (+) False AMCG00008475
TU61627 other downstream 246753 2127715 ~ 2143310 (+) True AMCG00008476
TU61670 other downstream 328521 2209483 ~ 2211514 (+) True G49340
TU61936 other downstream 884917 2765879 ~ 2770044 (+) True G49523

Expression Profile