RNA id: AMCG00008460



Basic Information


Item Value
RNA id AMCG00008460
length 1062
RNA type mRNA
GC content 0.55
exon number 3
gene id AMCG00008460
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 1884367 ~ 1889767 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTCCAACCAGTCACGCAACTTCGAAAGCTTTCAGATACAGTTTCTGCCCCCGGTGTATGGGATTGAGTTCTGCCTGGCGTTTACGGGCAACATCCTGGCCATCTGGCTCATGCTGACCAGGGAGCGCAGAAACTGGCACACTGGCGTGGTGTTCGCCTTCAACCTGGCGCTGAGCGACCTGCTGCACGCCAAGCTGGCTAGTGTGGGCGTGTGGCTGGTGGTGACGGTCATCTCCTGCCCCGTCCTGAGTTTCGCCACCGTGACCACAGGATGGAGGAACAACACGGAGTGCGTCTCCTTTAGGAAGGAAGGCTATAGCACGTCTTTCGCCTACAATGTGTTCCTGGCCGTGTTTGGGTGCTTTTTGCCCTTTTTGGCCACCTTCGCCTCCTACTTCTCCATCCTCTGGGTCGTCTGGAAGAACGAGAACATCACCCGGCTGGAGAAGAGGAAGGTGGCCGTGATGATCGCCACGGTGGTCATGATGTACACGGTGTCTTTCATCCCTTACCATGTCCTCAGGAACTACAACATCCACCTAAAGCTTGAGCACTCCATTAGCTCGCACACGACGGTGGTTTACTCAGCCTACCAGGTCACCAAAGGACTGTTCGCATCCACCCCAGTCAGCTCCAACCGCACCCACTGCGAGACCGCTTCTGGGAAGGACGACGAAGAGAGCTACCTTTCCTATAGTCTGTTTTTGACCGTTTTTGGGTGCGCCGTGCCCTTCCTGGCTACTTGCGCCTCCTATTACTGCATCCTGCGGGAGGTCGGCAGAAGCCACAGCATTTCAGCGCAGGACAAGCACAAGGTAGCTCTGATGGTGGGAGCCGTCGTGTCCCTGTACTTTGTTTCGTTCATCCCTTATCACGTCTTCAGGAATGTGAACCAGTATCTCAAGGTGCACGACGCTACAAGATGCAACATCTCCGTGTATAATGTGTATCAGGTGACCAAAGGTCTGATCACCCTGAACATGTGTGTGCACCCCCTGCTCTACGCATCACTGATGGAGAGCTGTCGAGCTCGGTGCTGTGGAGGGAACCCAACAGCCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU61564 lncRNA upstream 28111 1799861 ~ 1856256 (+) True G49261
TU61576 lncRNA upstream 35629 1815584 ~ 1848738 (+) True G49270
TU61582 lncRNA upstream 45363 1838186 ~ 1839004 (+) True G49271
TU61567 lncRNA upstream 78340 1803825 ~ 1806027 (+) True G49264
TU61531 lncRNA upstream 142790 1642430 ~ 1741577 (+) True G49236
TU61609 lncRNA downstream 19056 1908823 ~ 1910419 (+) True G49294
TU61586 lncRNA downstream 178290 2068057 ~ 2075649 (+) True AMCG00008473
TU61648 lncRNA downstream 273552 2163319 ~ 2208477 (+) True G49321
TU61672 lncRNA downstream 322662 2212429 ~ 2213493 (+) True G49341
TU61817 lncRNA downstream 555418 2445185 ~ 2464667 (+) True G49431
AMCG00008458 mRNA upstream 3405 1874037 ~ 1880962 (+) True AMCG00008458
AMCG00008461 mRNA upstream 82609 1796344 ~ 1801758 (+) True AMCG00008461
AMCG00008459 mRNA upstream 88565 1794811 ~ 1795802 (+) True AMCG00008459
AMCG00008454 mRNA upstream 146852 1718172 ~ 1737515 (+) True AMCG00008454
AMCG00008455 mRNA upstream 167500 1711117 ~ 1716867 (+) True AMCG00008455
AMCG00008468 mRNA downstream 1329 1891096 ~ 1894227 (+) True AMCG00008468
AMCG00008472 mRNA downstream 141021 2030788 ~ 2046937 (+) True AMCG00008472
AMCG00008473 mRNA downstream 172789 2062556 ~ 2072046 (+) False AMCG00008473
AMCG00008475 mRNA downstream 198713 2088480 ~ 2107792 (+) True AMCG00008475
AMCG00008476 mRNA downstream 244079 2133846 ~ 2143394 (+) False AMCG00008476
TU61499 other upstream 560098 1322811 ~ 1324269 (+) True G49208
TU61359 other upstream 915784 965838 ~ 968583 (+) True AMCG00008423
TU61256 other upstream 1004854 876554 ~ 879513 (+) True G49013
TU61033 other upstream 1295921 587280 ~ 588446 (+) True G48846
TU60995 other upstream 1332461 550281 ~ 551906 (+) True G48811
TU61614 other downstream 40887 1930654 ~ 1936502 (+) True G49298
TU61588 other downstream 202194 2091961 ~ 2105573 (+) False AMCG00008475
TU61627 other downstream 237948 2127715 ~ 2143310 (+) True AMCG00008476
TU61670 other downstream 319716 2209483 ~ 2211514 (+) True G49340
TU61936 other downstream 876112 2765879 ~ 2770044 (+) True G49523

Expression Profile