RNA id: AMCG00008461



Basic Information


Item Value
RNA id AMCG00008461
length 237
RNA type mRNA
GC content 0.46
exon number 3
gene id AMCG00008461
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 1796344 ~ 1801758 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGGCTGTATCTCAGGGAGAGTCACTTCTTATGCAAATGGTGTCAGCTGGTATCACTGGAAGGGACATTACTACTCTCTGAAAACCAGTGAGATGAAGATCAGACCTGTAGCTTTTCTTCTCTCAGATGATGCAGTTGACCGATACTGGATCTCCATATTTCACCACCACTCTCTTGGGGTCAATCTCAATGAGACAGTCCGTAGCAGCAGCTGGAaagcCATCAAGATCCCTTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU61531 lncRNA upstream 54767 1642430 ~ 1741577 (+) True G49236
TU61528 lncRNA upstream 164801 1629940 ~ 1631543 (+) True G49233
TU61523 lncRNA upstream 168011 1625397 ~ 1628333 (+) True AMCG00008451
TU61514 lncRNA upstream 289409 1506713 ~ 1506935 (+) True G49221
TU61466 lncRNA upstream 633654 1162483 ~ 1162690 (+) True G49178
TU61567 lncRNA downstream 2067 1803825 ~ 1806027 (+) True G49264
TU61576 lncRNA downstream 13826 1815584 ~ 1848738 (+) True G49270
TU61582 lncRNA downstream 36428 1838186 ~ 1839004 (+) True G49271
TU61609 lncRNA downstream 107065 1908823 ~ 1910419 (+) True G49294
TU61586 lncRNA downstream 266299 2068057 ~ 2075649 (+) True AMCG00008473
AMCG00008459 mRNA upstream 542 1794811 ~ 1795802 (+) True AMCG00008459
AMCG00008454 mRNA upstream 58829 1718172 ~ 1737515 (+) True AMCG00008454
AMCG00008455 mRNA upstream 79477 1711117 ~ 1716867 (+) True AMCG00008455
AMCG00008451 mRNA upstream 168273 1625294 ~ 1628071 (+) False AMCG00008451
AMCG00008450 mRNA upstream 289770 1497221 ~ 1506574 (+) True AMCG00008450
AMCG00008458 mRNA downstream 72279 1874037 ~ 1880962 (+) True AMCG00008458
AMCG00008460 mRNA downstream 82609 1884367 ~ 1889767 (+) True AMCG00008460
AMCG00008468 mRNA downstream 89338 1891096 ~ 1894227 (+) True AMCG00008468
AMCG00008472 mRNA downstream 229030 2030788 ~ 2046937 (+) True AMCG00008472
AMCG00008473 mRNA downstream 260798 2062556 ~ 2072046 (+) False AMCG00008473
TU61499 other upstream 472075 1322811 ~ 1324269 (+) True G49208
TU61359 other upstream 827761 965838 ~ 968583 (+) True AMCG00008423
TU61256 other upstream 916831 876554 ~ 879513 (+) True G49013
TU61033 other upstream 1207898 587280 ~ 588446 (+) True G48846
TU60995 other upstream 1244438 550281 ~ 551906 (+) True G48811
TU61614 other downstream 128896 1930654 ~ 1936502 (+) True G49298
TU61588 other downstream 290203 2091961 ~ 2105573 (+) False AMCG00008475
TU61627 other downstream 325957 2127715 ~ 2143310 (+) True AMCG00008476
TU61670 other downstream 407725 2209483 ~ 2211514 (+) True G49340
TU61936 other downstream 964121 2765879 ~ 2770044 (+) True G49523

Expression Profile