RNA id: AMCG00008470


Basic Information

Item Value
RNA id AMCG00008470
length 5105
RNA type mRNA
GC content 0.60
exon number 34
gene id AMCG00008470
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 1896162 ~ 1913755 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGAAACGCGCATCCCGTGTGAGGCTGAAGCGCCGCCAGCGGACGTGGTTGAACACGACCCAGCAGACGGCCGCCTCACCTCTGCGCTTGACGAATGGTAGAGTCCGGTGTACCCCGGTTTCCGCGCGAAAAGCCGGCCCGCCGCGCCGCAGCTGCAGACAGGATCCATAAGAAGCGCCTCCTCTGCGCTGCACTCCGCCTGCGCTGCGCGTCTTTaaggatattttatttttgtaaccctCTTTTGCgggttctttgtttttttcccttccttttaaTCTCACACAGCCGCGCACTGCATTTTTAATCgcctttcctttattttaatccAGCGCGTTCAAACTTGCGATGCCAGCCAAGACAGCCCGGTCCCTCCCCGAGGACGTCAGGAAGCGGCTTCAAGTTTTGGATAAAGATGGGGATGGTCTCACAGACGAGGAGTGTGTGAAGGAGAAGCTGAGTCTGGTGCATGGCTACCTGAAGGCAGATGCCCAGGTTCAGCTCAGCAGTCTGGAGAGCAAGCTGAAGAAAGAGGAGCTTTCAGTGGAGGGGTACCTGACCAAAGTGAAGGCGCTGCTCGGCCAGGAGCTGAGCGCGGAGAACGGGGAGCTGAACGGCCAGGCCAACGGCTGCGCGGAGAACGGGGAGCACAGCGACGACCACAATGGAGAGGCGGCCATGGAGAGCCAGGACGAGGGAGTGAAGTCGCCCGGTGCCGCCAAGCCCAGGGGGGGCAGGAGGTCCAAGACTGAGGGGGACGCGAAGAAGTCTCCAGTCAGTTCAAGGGTCACCAGAAACTCGGCGAGGCAACCGACAATCTTGTCCATGTTTTCAAAAGTCCCAGCCAAGCGTAAATCCGATGAAGCGAATGGAGTGGAGGAGCCGAAGGCTaaagaggaggaagagcaggaggaggaagagaagtcACAAGACGAGAAGAGATTAAAGATTGAATCGGAGGAAAAGCCTGAGACTAAAGATGCTGCTATGGAGAAGAAACCTGTACCGCCAGCCAAGACTCCGCCTCCCAAATGCCCGGACTGCCGGCAATACCTGGACGACTCGGACCTAAAGTTTTTCCAGGGAGACCCCGATAATGCCCTGGACGAGCCGGAGATGCTGACGGACGAGCGTCTGTCCCTGTTCGACGCGAACGAAGACGGGTTCGAGAGCTACGAAGATCTGCCCCAGCACAAGATCACCAACTTCAGTGTCTACGATAAGAGGGGCCACCTGTGTCCCTTCGACTCGGGGCTGATTGAGAAGAACGTGGAGCTGTACTTCAGCTGTGCCGTGAAGCCCATCTATGACGACAACCCCTGCATGGACGGTGGGGTTCCTGCAAAAAAGCTCGGCCCGATCAACGCCTGGTGGATAACCGGGTTCGATGGCGGTGAAAAAGCCTTGATTGGATTCACTACAGCCTTTGCCGACTACATCCTGATGGACCCCAGCGAGGAGTACGCGCCCATCTTCGCCCTAATGCAGGAGAAGATCTACATGAGCAAGATCGTGGTGGAGTTCCTGCAGAAGAACCCGGAGGTCAACTATGAGGACCTGCTCAACAAGATCGAGACCACCGTTCCTCCGGCTGGCCTGAACTTCAACCGCTTCACCGAGGACACGCTGCTGCGGCACGCCCAGTTTGTGGTGGAGCAGGTGGAGAGCTACGACGAGGCGGGGGACTCGGACGAGCAGCCCATCATTGTCACGCCCTGCATGCGAGACCTCATCAAGCTGGCGGGGGTAACCCTGGGCAAGAGGCGAGCCGCGAGGAGGCAGGCCATCCGCCACCCCACCAAGATCGAGAAGGACAACAAGGGTCCCACCAAGGCTACCACCACCAAGCTGGTCTACCAGATCTTCGACACCTTCTTCTCTGATCAGATTGAGCAGGATGACAAGGAGAACGTCACCAAGCGCCGGCGCTGCGGGGTCTGTGAGGTCTGCCAGGCTCCGGACTGCGGGAAATGCACGGCCTGCCAGGACATGATTAAATTTGGGGGGAGCGGCCGCAGCAAACAGGCCTGCATGAAGCGGAGGTGTCCAAACCTGGCGGTGAAGGAGGCCGAGGATGATGAGAACATGGAAGAGGAAGACGTCCTGCCGGTGAAGATCACGCCCAAGAAGATGTCCCAGGCCAAGAAGAAGCAGAGCAAGAGCAAGCTGTCTTGGGTGGGAGAGCCGGTCAAGACGATGGGCCAGAAGGACTACTACATGAAGGTCTGTGTGGAGGAGGAGATCCTGGAGGTGGGGGACTGCGTGTCGGTCAGCCCCGTTGACCCGTCCCACCCTCTCTACCTGGCCCGGATCACCGCGCTCTGGGAGGACAACAATGGCAAGATGTTCCATGCCCACTGGTTCTGCCGGGGGACGGACACGGTGCTGGGCGAGTCCTCGGACCCCCTGGAGCTTTTCCTGGTCGATGAGTGCGAGGACATGCAGCTGTCCTACGTCCAGAGGAAGGTCAACGTCATGTACAAGGCCCCGTCCAACAACTGGGCCATGGAGGGTGGAATGGACAACGAGATCAAAGTCATAGATGACGACGATGGCAAGAGCTTCTTCTACCAGCTGTGGTATGAGCCAGAGTACGCGCGCTTCGAGACACCTCCCAAGGTCACCCCCCCGGAGGACCGCAAGTTCATGTTCTGCGCCAGCTGCACACGCCAGGACGAGGTGGCCGCGCAGCAGACCCCAAGGGTGGAGGAGCCGCTGGACTTGGAGCACGACTCCAAGGTGTTCTACGCCATGGCCTGCCTGAGAGGGGAGCAGTACCGCGCCGGCGATGGTGTCTACATGCCTTCGGATGCCTTCTCCTTCAACGTGAAGGCCGCCAGCCCGGTGAAGCGGCCCCACAGGAAAGAGGATGTGGACGAGGAGCTGTACCCCGAGTACTACAGGAAGTCCTCAGACTACATCAAGGGCAGCAACCTGGACGCCCCCGAGCCATTCCGGGTGGGCCGCATCAAAGAGATCTTCTGCAGCAAGCGCGGCATGAGCAAGACCAGCGAGCCCGAGATCAAACTGCGCATCTACAAGTTCTACAGGCCAGAAAACACCCACAAGGGCCTCAAGGGGGGCTACCACACCGACATCAACATGCTGTACTGGAGCGACGAGGAGGTGACCGTGGACTTCAAGGACGTGCAGGGCCGCTGCACCGTGGAGTACGGGGAGGACCTGATCGAGACAGTGCAGGAGTACTCCAGCGGGGGGCACGACCGCTTCTACTTCCTGGAGGCCTACAATGCCAAGACCAAGAGCTTCGAGGACCCTCCGAACCATGCGCGCAGTGTGGTCCAGAAGGGCAAAGGCAAGGGCAAAGGAAAAGGGAAAGGCAAAGGGAAGTCGTCGTCCCCCCAGGAGCAGCAGGAAGCGCAGGACCTGAAGCCCCAGAAGCTGCGCACCTTGGACGTGTTCTCCGGCTGCGGGGGGCTGTCTGAGGGCTTCCATCAGGCGGACATCGCCGAGACCCTGTGGGCCATCGAGATGTGGGACCCGGCCGCCCAGGCCTTCCGGCTCAACAACCCGGGCACCACGGTGTTCACCGAGGACTGCAACGTCCTGCTGAAGCTGGTCATGTCCGGCGAGAAGACCAACTCCCTGGGCCAGAAGTTGCCACAGAAGGGGGACGTGGAGATGCTGTGCGGCGGCCCCCCCTGCCAAGGCTTCAGCGGCATGAACCGCTTCAACTCCCGCACCTACTCCAAGTTCAAGAACTCGCTGGTGGTCTCCTATCTCAGCTACTGTGACTACTACAGGCCCAAGTTCTTCCTGCTGGAGAATGTCCGGAATTTCGTGTCCTTCAAGCGCTCCATGGTGCTGAAGCTGACTCTGCGCTGCCTGGTGCGGATGGGATACCAGTGTACCTTCGGCGTCCTGCAGGCAGGGCAGTACGGGGTGGCACAGACCCGCCGCCGAGCCATCATCCTGGCCGCTGCGCCGGGGGAGAAGCTGCCCAAATACCCCGAGCCCCTGCACGTGTTTGCCCCCCGCGCCTGCTCCCTCAGCGTCGTGGTGGACGAGAAGAGATACGTGGGCAACATCACCCGGATCGGCTGCGGCGCATACCGGACCATCACCGTGCGGGACGCCATGTCCGACCTCCCGGAGATCCGCAACGGGGCGTCGGGGCTGGAGATCTCGTACAACGGGGAGCCCCAGTCCTGGTTCCAGAGGCAGATCCGCGGCTCGCAGTACCAGCCCATCCTCCGGGACCACATCTGCAAGGACATGAGTGCGCTGGTGGCGGCTAGAATGCGGCACATCCCACTGGCGCCGGGGTCCGACTGGCGCGACTTACCCAACATCGAGGTGCGCCTGAGCGACGGCACCACCACCAAGAAGCTGCGCTACACGCACCCGGACAAGAAGAACGGGCGCTCGAGCACCGGGGCCCTGCGGGGGGTCTGCACCTGTGCCGGAGGCAAACCGTGTGACCCAGCTGACCGCCAGTTCAACACCCTGATCCCCTGGTGTCTGCCGCACACCGGCAACCGGCACAACCACTGGGCCGGGCTCTACGGCAGGCTGGAGTGGGACGGCTTCTTCAGCACCACCGTGACCAACCCCGAGCCCATGGGCAAGCAGGGCCGCGTCCTGCACCCCGAGCAGCACCGGGTGGTCAGCGTGCGGGAGTGCGCGCGGTCGCAGGGCTTCCCCGACACGTACCGCTTCTTCGGCAACATCCTGGACAAGCACAGACAGGTTGGAAACGCCGTCCCGCCGCCTCTCGCCAAAGCCATTGGCCTGGAGATCAAACAGTGCTTGTTGGAGAAGATGAAAGAGAGCAGCGCAGAGAATGTGAAACAGGAAAACGTGTACATGGCCGACTGAATCCTCGCACGTTCCCGCTCTCGAGACGCCGCCTCCGAGGGGCTTCTTATAAAGCACTGAAGCCCTGCATTTCACTCCCATATCAGCGAGCGATCGCCCGCCGACCGACCCATGATTTTACAAAGATGACAATGTGGTGCcattgtgtaattttatttgtctgtttttaatgtaattttaaccaTGTATTTGCAACATCGATCCGCTTCCAGCAAGCGggaaataattgtatgtagttTTTATATgttgtaatatttcaaataaag

Function

GO:

id name namespace
GO:0031017 exocrine pancreas development biological_process
GO:0051216 cartilage development biological_process
GO:0048565 digestive tract development biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0035622 intrahepatic bile duct development biological_process
GO:0090116 C-5 methylation of cytosine biological_process
GO:0051567 histone H3-K9 methylation biological_process
GO:0044030 regulation of DNA methylation biological_process
GO:0010842 retina layer formation biological_process
GO:0005634 nucleus cellular_component
GO:0003886 DNA (cytosine-5-)-methyltransferase activity molecular_function
GO:0008134 transcription factor binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K00558 DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61705 lncRNA downstream 74607 1819774 ~ 1821555 (-) False AMCG00008466
TU61681 lncRNA downstream 156833 1738280 ~ 1739329 (-) True G49346
TU61677 lncRNA downstream 263195 1629935 ~ 1632967 (-) False AMCG00008452
TU61527 lncRNA downstream 267797 1626287 ~ 1628365 (-) True G49232
TU61502 lncRNA downstream 571893 1321891 ~ 1324269 (-) True G49211
TU61753 lncRNA upstream 140760 2054515 ~ 2066295 (-) True G49389
TU61756 lncRNA upstream 140760 2054515 ~ 2066295 (-) False G49389
TU61749 lncRNA upstream 143978 2057733 ~ 2063556 (-) False G49389
TU61770 lncRNA upstream 154328 2068083 ~ 2075648 (-) True G49393
TU61771 lncRNA upstream 156035 2069790 ~ 2070872 (-) True G49394
AMCG00008463 mRNA downstream 25954 1862614 ~ 1870208 (-) True AMCG00008463
AMCG00008462 mRNA downstream 36671 1846916 ~ 1859491 (-) True AMCG00008462
AMCG00008466 mRNA downstream 56063 1821011 ~ 1840099 (-) True AMCG00008466
AMCG00008467 mRNA downstream 84468 1809871 ~ 1811694 (-) True AMCG00008467
AMCG00008465 mRNA downstream 87646 1804929 ~ 1808516 (-) True AMCG00008465
AMCG00008469 mRNA upstream 21549 1935304 ~ 1936419 (-) True AMCG00008469
AMCG00008471 mRNA upstream 36905 1950660 ~ 1951836 (-) True AMCG00008471
AMCG00008474 mRNA upstream 160028 2073783 ~ 2085025 (-) False AMCG00008474
AMCG00008477 mRNA upstream 238856 2152611 ~ 2165650 (-) True AMCG00008477
AMCG00008482 mRNA upstream 255576 2169331 ~ 2172673 (-) True AMCG00008482
TU61724 other downstream 15200 1879621 ~ 1880962 (-) True G49375
TU61698 other downstream 45880 1798845 ~ 1850282 (-) False AMCG00008462
TU61344 other downstream 955510 931892 ~ 940652 (-) False AMCG00008428
TU61309 other downstream 1048116 841883 ~ 848046 (-) True G49054
TU61225 other downstream 1169102 724880 ~ 727060 (-) True G48989
TU61772 other upstream 164948 2078703 ~ 2085006 (-) True AMCG00008474
TU62046 other upstream 992920 2906675 ~ 2908665 (-) True G49605
TU62371 other upstream 1860828 3774583 ~ 3777354 (-) True AMCG00008547
TU62870 other upstream 3835135 5748890 ~ 5885450 (-) True G50267
TU62882 other upstream 3873995 5787750 ~ 5792584 (-) False AMCG00008608

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00052142 True 4896 mRNA 0.48 34 NC_007114.7 54591218 ~ 54607166 (-)
grasscarp (Ctenopharyngodon idella) CI01000113_00574016_00587822.mRNA True 5264 mRNA 0.49 34 CI01000113 573455 ~ 588082 (+)