RNA id: AMCG00008471


Basic Information

Item Value
RNA id AMCG00008471
length 1005
RNA type mRNA
GC content 0.46
exon number 3
gene id AMCG00008471
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 1950660 ~ 1951836 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGGCTGTATCCCGCAAGCGCGTACACAGGCGGACCCATCTTCCCCGGGTCTTTGAACAGCACAAGCAACAGTTTCAAGCTGTGATAAAGACTCTCGTACAGCATGAAATCGAGTTGTCAAATGTAGTGGCATGTGTGACGGACAATGCAAAGTACATGCGAAAGATGTTCAAAGACAGTTTAAGTGGGATTTTAACTAACTGCATTCATGTGACCTGCTGGGCGCATATTACAGCTTTACTAGGGGAGTGCTGGCGCAGATTGTATTTAGAAGTGGACCGCCTGTGTGCGCTAATAAAAAAGTTGTTCTGCAAAGTCCCACTCAGATGTGCTCGTTTCAGAGACTACCTGATTGACCATGGCATTGAAAGCCCCATATTACCAGCGGTACCCGTTATAGCGAGGTGGGATAGTTGGTTTAAAGCTGTGGAGTATCGCTGCCAGCGTGCAGAAAACTACAAGAGGTTCGCTGCGAGGGAAACTGAAGTGGAGGATGCAACTGCCGTCCTAGAGGAACTAAACGTTTTACTTAAAAGTGAATCGCTTGTGGCAGATTTAAATTTCATTCAAACAGCAGCAATGCCACTTATTCAGACATTACTTAAATTTGAACCCCGGTCTACATTGCCAACAGAGGTGTACAACATCGCATCTGTTCTACTCGCAACACTTCAACACAGAGAACGCATTGCGACAGATGATCTGAAACGACAGGTTTTCAAACATTGTGCAGAGAAACTGCAGGGATACAGTATCCCACTGCTGAGCTCTGTACCTGAGGCTGAGTGGGCCGTTTACTTGAACATTGTAAAGGAACTTCCCAGTGACAATGACATGTCCGTACACACTTTTTGGAACACCATGGAGAAGCGTTTGCCAAAATTTAGCCAGATTGCTCGAGTTGTTTTGGCGATACCATGCAATTCAGGCGATGCTGAATGCAGTTTCTCCAAACTTGGGGAAGTGCTGACCCCACAGCATGTCAATGGAAAGCATGGAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61705 lncRNA downstream 129105 1819774 ~ 1821555 (-) False AMCG00008466
TU61681 lncRNA downstream 211331 1738280 ~ 1739329 (-) True G49346
TU61677 lncRNA downstream 317693 1629935 ~ 1632967 (-) False AMCG00008452
TU61527 lncRNA downstream 322295 1626287 ~ 1628365 (-) True G49232
TU61502 lncRNA downstream 626391 1321891 ~ 1324269 (-) True G49211
TU61753 lncRNA upstream 102679 2054515 ~ 2066295 (-) True G49389
TU61756 lncRNA upstream 102679 2054515 ~ 2066295 (-) False G49389
TU61749 lncRNA upstream 105897 2057733 ~ 2063556 (-) False G49389
TU61770 lncRNA upstream 116247 2068083 ~ 2075648 (-) True G49393
TU61771 lncRNA upstream 117954 2069790 ~ 2070872 (-) True G49394
AMCG00008469 mRNA downstream 14241 1935304 ~ 1936419 (-) True AMCG00008469
AMCG00008470 mRNA downstream 36905 1896162 ~ 1913755 (-) True AMCG00008470
AMCG00008463 mRNA downstream 80452 1862614 ~ 1870208 (-) True AMCG00008463
AMCG00008462 mRNA downstream 91169 1846916 ~ 1859491 (-) True AMCG00008462
AMCG00008466 mRNA downstream 110561 1821011 ~ 1840099 (-) True AMCG00008466
AMCG00008474 mRNA upstream 121947 2073783 ~ 2085025 (-) False AMCG00008474
AMCG00008477 mRNA upstream 200775 2152611 ~ 2165650 (-) True AMCG00008477
AMCG00008482 mRNA upstream 217495 2169331 ~ 2172673 (-) True AMCG00008482
AMCG00008481 mRNA upstream 221000 2172836 ~ 2203443 (-) True AMCG00008481
AMCG00008480 mRNA upstream 256337 2208173 ~ 2212837 (-) True AMCG00008480
TU61724 other downstream 69698 1879621 ~ 1880962 (-) True G49375
TU61698 other downstream 100378 1798845 ~ 1850282 (-) False AMCG00008462
TU61344 other downstream 1010008 931892 ~ 940652 (-) False AMCG00008428
TU61309 other downstream 1102614 841883 ~ 848046 (-) True G49054
TU61225 other downstream 1223600 724880 ~ 727060 (-) True G48989
TU61772 other upstream 126867 2078703 ~ 2085006 (-) True AMCG00008474
TU62046 other upstream 954839 2906675 ~ 2908665 (-) True G49605
TU62371 other upstream 1822747 3774583 ~ 3777354 (-) True AMCG00008547
TU62870 other upstream 3797054 5748890 ~ 5885450 (-) True G50267
TU62882 other upstream 3835914 5787750 ~ 5792584 (-) False AMCG00008608

Expression Profile