RNA id: AMCG00008472


Basic Information

Item Value
RNA id AMCG00008472
length 3138
RNA type mRNA
GC content 0.48
exon number 7
gene id AMCG00008472
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 2030788 ~ 2046937 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACAACTGCTGCTGCGTTCTGTCCCATTGTGATTGACCCTCCCACAGTGGTGGTGAAATATGGAGATCCAGTATCGGCCAACTGCACTGTAACACGGACAACCAGAGGAATGGGCTGGGAGGCATCGGTTGGATCCATAGACATGCAAACAGATGTCCAGTCTCTCCTCTGGAGTGTCAGCAGTCTGACTGACTGGACCGCAGAGCCCAAATGCTACGCAAACTTTCAGACTGAGCCCAAGCAGTGCAATCAAAACCTCAACATCAGACTCTACATTGGTGCTGAGCTATCAGGGTGTCGTGACCGTGTTGAAGTGATGGAGCACCAGACCCTGGGCGACAGTGTTGTCTGCACAGTGCAGGGCAGTCCTGCCCCTGAGACCAGGTGGATCAAGGATGGACGAGAGGTTGACGCCTCTGCTCCCCTGAGCAGGACAGACGGAGGACTGTACACCTATAGAGCCTTCAATACGTATGGATCCATGACTCACAATGTCAGCGTTGAGGTGCTCTCTGCTGCTGCGTTCTGTCCCATTGAGATTAACCCTGAGAGAGTGGTGGTGAAATATGGAGATCCAGTATCGGCCAACTGCACTGTAACACAGACAACCAGAGGAATGGGCTGGGAGACATCGGTTGGATCCATAGACATGCAAACAGATTTCCAGTCTCTCCTCTGGAATGTCAGCAGCCTGACTGACTGGACCGCAGAGCCCAAATGCTACGCAAACTTTCAGACTGAGCCCAAGCAGTGTGTGAAAAAGCTTGACATCACTCTCTACAAGCTGAGACTGGGACCAGGAGGACCACAACCAAACCCTATTATGAAGTCTGAGCCCCTCAACATCACAGTGCACTaTAAGCCAAGTGTAACATCTAAAAATCAAACTGTGACGGCCGTCTTGAGAGGAGGGGACGTCATTCTGTCATGCGCTGCTGTGGGTAACCCCACCCCGAAGCTGAAGTGGGTTAACAATTTAAATGAGATCATCCCAAACAGCTTCAAAGATAAAGAGTCTAATATAACGATTGCTGGAGCCTCGTTCGCCCACGCTGGGATTTACACGTGCATTTCTCTAAACAAATTGGGTGAAGACTCCATAATAGCTGAAGTAAAAGTTATAGAGGACTATCTTCCGGTCTTCGCTGGCATCATCGCGGCCACCGTCCTGGTGCTTTTGATCGTTACCCTGATTGTGTTCTCTATGTActacaagaagaagaaaacggGACAGTACAACCTGAAGAATGGGAAGATCCCCACCAAGAACGGGAACGTGGCGCAGAATGGCAAGGACACGTCCATTCCCATGGGCAAATTATACACCGCGTAAAGACCCGCCCCCTCAAGAGACCCACAGTCTTTACAAACTTGGCGTGAGGGAGAGGAGGCTGGAGACAGGGCCAGTAAATACCCCTCAGTCGGACTCTGATTGGAGAGCACCTGTGGGACTTACAGCAAAGGCTGATGGTCCCGCCTCACACACTACCACACTAACCTTCCAGGGGTGTCTTCTCTGGCACCTTAAAATTTGAGAAGCTCCATTCAATTGTGTTACCTTTTCTTGGTTTAGTTTTCTTCTTAACATTCTAACTGGATCCTGTTTTTACTACCCCTCAATCCCCCCATACTTCCCACCGCCACATGTCATTCAGTGGGAATTAACACTCACCAAACCACCCCCCACCGCATCCCAAAACCGCTACGGGTACGGCACTTCCCCGCAGGAGGGACGCAGATCTGGATGGTGATGTTCTCCAGGCATCCCAGGTAGAGAGAGGAGTTAGTTGCTGCCGTGCAGTTATCCAGCCATCTACCAAAGAGACCAAGGCACAAATTGGGGATTGACCGAGTCTGGGGCATGCGGAGCCAATCTCTGGGCAGCAAGAACTCCTTCCAGGCTTACTACCAGCGGAGAAGGATGGTGTCTATTTGCACACGCTGGAACTACGAGAGTCGGGAGGACAGGGACTGAGCCTGGTGGCTTCCTCGTTCACTGTGGGAGCAATCGTGGGCTACAACATGGTCTACACACGGCAGAGTGAAGCGAAAACCCTGTGTACCGTGTCGAGGGTATGATTGCATGGAGGTGTCGGTGATGGATGTGTACGCCGGCCCCCGTTCCCCCTCCCCGCAGCCTGAGGCACTTCCCGTAAGAGATAACGGACCAGATCACTCCCACTTTTCAGGGCAGGTCATGATTCATGCTCGTGATCATGGTACGCACCCCCTCAATGCCTCCCACCTGGAGACTCTAAACATGTCTAAATTATTGAAATTGTCCCAGAAGCAGAGAAAGGGTGATCACTTTCGAAAGGCTGTTTCTGGGCTGGAGTGTCGGGGGGAATTGAGCAGATATTACCACCTGAcgctggggggaggggggagttCCTGTCTCAGTGTGTGCTCAACTCTGAGGTTTGTGGCAATTGTCTGCTCGTGGGTTTATCCTATGACTAAATTActttggttaatttattttccacagtttCAGTTTCACAGGCCCTGAACTCCCATTTTAGACTTAGAAATTTCGTACCGTTGGCTGACAAACCTCTGAATGAATGATAGGTCAAgtgtatatacttttatattaaatgtacctTGAAGTCACTGCTCTGAATGGTTTCAAAGTGTCCAGAGAGGCAGCTCCAGCTGTTTTCATATCTGTGCCTTTTAGTTTTATAaggaaatgtaaatgtgtatatttatatttaaactgtattatatGAAATGTGCACTGAaggtttttaaattacaatttttgttattgttaaaataatggcattattggtatttttttaaataacgatctaattaaaaaatgatttgaagtcttttgtatttactgtttagTTTACTGGGCTTTCTTTActggagtttgtttttaattgtccGTTGTTCTCCACTGGGGTGATATATATCTGGGGTCCTGTATTTCCTATGAAATACGATGAATTTAGGATGTGGGCTTCATAGGAATTATCCTTATCTGATGTTCAATGTGACATTCCCTACTGTGGAAAATCCCTGCTGTTCAATCCGTAATAGAAGTaaagtctgtttatttattggctTGTTTTTTGGGAAAAAGCCCAAGCGGTGCacagacccccccaccctcttcAAATTCGGT

Function

GO: NA

KEGG:

id description
ko04151 PI3K-Akt signaling pathway
ko04512 ECM-receptor interaction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61609 lncRNA upstream 120369 1908823 ~ 1910419 (+) True G49294
TU61564 lncRNA upstream 174532 1799861 ~ 1856256 (+) True G49261
TU61576 lncRNA upstream 182050 1815584 ~ 1848738 (+) True G49270
TU61582 lncRNA upstream 191784 1838186 ~ 1839004 (+) True G49271
TU61567 lncRNA upstream 224761 1803825 ~ 1806027 (+) True G49264
TU61586 lncRNA downstream 21120 2068057 ~ 2075649 (+) True AMCG00008473
TU61648 lncRNA downstream 116382 2163319 ~ 2208477 (+) True G49321
TU61672 lncRNA downstream 165492 2212429 ~ 2213493 (+) True G49341
TU61817 lncRNA downstream 398248 2445185 ~ 2464667 (+) True G49431
TU61966 lncRNA downstream 765237 2812174 ~ 2812893 (+) True G49541
AMCG00008468 mRNA upstream 136561 1891096 ~ 1894227 (+) True AMCG00008468
AMCG00008460 mRNA upstream 141021 1884367 ~ 1889767 (+) True AMCG00008460
AMCG00008458 mRNA upstream 149826 1874037 ~ 1880962 (+) True AMCG00008458
AMCG00008461 mRNA upstream 229030 1796344 ~ 1801758 (+) True AMCG00008461
AMCG00008459 mRNA upstream 234986 1794811 ~ 1795802 (+) True AMCG00008459
AMCG00008473 mRNA downstream 15619 2062556 ~ 2072046 (+) False AMCG00008473
AMCG00008475 mRNA downstream 41543 2088480 ~ 2107792 (+) True AMCG00008475
AMCG00008476 mRNA downstream 86909 2133846 ~ 2143394 (+) False AMCG00008476
AMCG00008478 mRNA downstream 209520 2256457 ~ 2257456 (+) True AMCG00008478
AMCG00008479 mRNA downstream 229854 2276791 ~ 2277090 (+) True AMCG00008479
TU61614 other upstream 94286 1930654 ~ 1936502 (+) True G49298
TU61499 other upstream 706519 1322811 ~ 1324269 (+) True G49208
TU61359 other upstream 1062205 965838 ~ 968583 (+) True AMCG00008423
TU61256 other upstream 1151275 876554 ~ 879513 (+) True G49013
TU61033 other upstream 1442342 587280 ~ 588446 (+) True G48846
TU61588 other downstream 45024 2091961 ~ 2105573 (+) False AMCG00008475
TU61627 other downstream 80778 2127715 ~ 2143310 (+) True AMCG00008476
TU61670 other downstream 162546 2209483 ~ 2211514 (+) True G49340
TU61936 other downstream 718942 2765879 ~ 2770044 (+) True G49523
TU62012 other downstream 839829 2886766 ~ 2888896 (+) True G49583

Expression Profile