RNA id: AMCG00008473



Basic Information


Item Value
RNA id AMCG00008473
length 519
RNA type mRNA
GC content 0.53
exon number 4
gene id AMCG00008473
representative False

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 2062556 ~ 2075649 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCTGCTGCGTTCTGTCCCATTGAGATTGACCCTCCTGCAGTGGTGGTGAAATATGGAGATCCAGTATCGGCCAACTGCACTGTAACACGGACAACCAGAGGAATGGGCTGGGAGGCATCGGTTGGATCCATAGACATGCAGACGGGTCCCCAGTCTCTCCTCTGGAGTGCCAGCAGTCTGACTGACTGGACCGCAGAGCCCAAATGCTACGCAAACTTTCAGACTGAGCCCAAGCAGTGTGAGAAAAAGCTCAGCATCCTTCTCTACATTCAGTACACGTGTGAGGCAGAGCTGAGACTGGGACCAGAAGGACCACAAGCAAACCCTGTGATGAAGTCTGAGCCCCTCAGCGTCACAGTGCACTACGAGCCTGTTTTAAAGGATCCGCATGTTGAGCATGTGTTAGTTAAACATGGTGTGGAGGACGAATACCTGACCTGCAGCGCCAGCGAATATGTGTGTAATGCTACGAACAGCTATGGCACAGCGTCCAAGACATTCGTGGTCAGCGTGGAGGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU61609 lncRNA upstream 152137 1908823 ~ 1910419 (+) True G49294
TU61564 lncRNA upstream 206300 1799861 ~ 1856256 (+) True G49261
TU61648 lncRNA downstream 91273 2163319 ~ 2208477 (+) True G49321
TU61672 lncRNA downstream 140383 2212429 ~ 2213493 (+) True G49341
TU61817 lncRNA downstream 373139 2445185 ~ 2464667 (+) True G49431
TU61966 lncRNA downstream 740128 2812174 ~ 2812893 (+) True G49541
TU62010 lncRNA downstream 813785 2885831 ~ 2886138 (+) True G49582
AMCG00008472 mRNA upstream 15619 2030788 ~ 2046937 (+) True AMCG00008472
AMCG00008468 mRNA upstream 168329 1891096 ~ 1894227 (+) True AMCG00008468
AMCG00008460 mRNA upstream 172789 1884367 ~ 1889767 (+) True AMCG00008460
AMCG00008458 mRNA upstream 181594 1874037 ~ 1880962 (+) True AMCG00008458
AMCG00008461 mRNA upstream 260798 1796344 ~ 1801758 (+) True AMCG00008461
AMCG00008475 mRNA downstream 16434 2088480 ~ 2107792 (+) True AMCG00008475
AMCG00008476 mRNA downstream 61800 2133846 ~ 2143394 (+) False AMCG00008476
AMCG00008478 mRNA downstream 184411 2256457 ~ 2257456 (+) True AMCG00008478
AMCG00008479 mRNA downstream 204745 2276791 ~ 2277090 (+) True AMCG00008479
AMCG00008484 mRNA downstream 323018 2395064 ~ 2402598 (+) True AMCG00008484
TU61614 other upstream 126054 1930654 ~ 1936502 (+) True G49298
TU61499 other upstream 738287 1322811 ~ 1324269 (+) True G49208
TU61359 other upstream 1093973 965838 ~ 968583 (+) True AMCG00008423
TU61256 other upstream 1183043 876554 ~ 879513 (+) True G49013
TU61033 other upstream 1474110 587280 ~ 588446 (+) True G48846
TU61588 other downstream 19915 2091961 ~ 2105573 (+) False AMCG00008475
TU61627 other downstream 55669 2127715 ~ 2143310 (+) True AMCG00008476
TU61670 other downstream 137437 2209483 ~ 2211514 (+) True G49340
TU61936 other downstream 693833 2765879 ~ 2770044 (+) True G49523
TU62012 other downstream 814720 2886766 ~ 2888896 (+) True G49583

Expression Profile