RNA id: AMCG00008474


Basic Information

Item Value
RNA id AMCG00008474
length 648
RNA type mRNA
GC content 0.59
exon number 4
gene id AMCG00008474
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 2073783 ~ 2085025 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCACCCCTGCCACACACGCCCGGCGCCATTGTGGAGAGCACCGCGCCGGCCCGGGCTGTAAGCAGTGTGAGCGGCTGCGTGGAGAGACTCAGACACCGGACACAGCCGCTCCTCCCAGCCGCTCCGTGCGTGTGACGGACACAGAAGACCCTCCGAGCCGCCGCCATGGCCCGGGCCGCGCTGCCCCTGTGCGCCGCCCTGAGTCTCCTGCGCTGCGGTCTCTGGgtccctgtgtctctgggtccctgtgtctctgggtCCCTGTGTCTCCggctgctgctgcagacTGTCCCATTGTGATTGACCCTCCCACAGTGGTGGTAAGATATGGAGATCCATCATCGGCCAACTGCACTGCAACACGGACAACCAGAGGAATGGGCTGGGAGGCATCGGTTGGATCCATAGACATGCAGACGGGTCCCCAGTCTCTCGTCTGGAGCGTCAGCAATCTGACTGACTGGGCTGTAGAGCCCAAATGCTACGCAAACTTTGATACGGAGCCAAAGCAGTGTTTGAAAAAGCTCAACATCCTTCTCTACAtaAGTCTCATGTTGCATTCCTCTGCTGTTCTGCTGGTCCCAGCAGTTCCTCAGGTCTCTCCTCTTTCGGTAAACAAAGACACCAACTCCTATGAGTATTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61771 lncRNA downstream 2911 2069790 ~ 2070872 (-) True G49394
TU61753 lncRNA downstream 7488 2054515 ~ 2066295 (-) True G49389
TU61756 lncRNA downstream 7488 2054515 ~ 2066295 (-) False G49389
TU61749 lncRNA downstream 10227 2057733 ~ 2063556 (-) False G49389
TU61705 lncRNA downstream 252228 1819774 ~ 1821555 (-) False AMCG00008466
TU61798 lncRNA upstream 151502 2236527 ~ 2236861 (-) True G49414
TU61803 lncRNA upstream 274835 2359860 ~ 2360112 (-) True G49419
TU61850 lncRNA upstream 291980 2377005 ~ 2436757 (-) True G49462
TU61913 lncRNA upstream 551890 2636915 ~ 2702422 (-) True AMCG00008491
TU61973 lncRNA upstream 738216 2823241 ~ 2823976 (-) True G49547
AMCG00008471 mRNA downstream 121947 1950660 ~ 1951836 (-) True AMCG00008471
AMCG00008469 mRNA downstream 137364 1935304 ~ 1936419 (-) True AMCG00008469
AMCG00008470 mRNA downstream 160028 1896162 ~ 1913755 (-) True AMCG00008470
AMCG00008463 mRNA downstream 203575 1862614 ~ 1870208 (-) True AMCG00008463
AMCG00008462 mRNA downstream 214292 1846916 ~ 1859491 (-) True AMCG00008462
AMCG00008477 mRNA upstream 67586 2152611 ~ 2165650 (-) True AMCG00008477
AMCG00008482 mRNA upstream 84306 2169331 ~ 2172673 (-) True AMCG00008482
AMCG00008481 mRNA upstream 87811 2172836 ~ 2203443 (-) True AMCG00008481
AMCG00008480 mRNA upstream 123148 2208173 ~ 2212837 (-) True AMCG00008480
AMCG00008486 mRNA upstream 353684 2438709 ~ 2445212 (-) True AMCG00008486
TU61724 other downstream 192821 1879621 ~ 1880962 (-) True G49375
TU61698 other downstream 223501 1798845 ~ 1850282 (-) False AMCG00008462
TU61344 other downstream 1133131 931892 ~ 940652 (-) False AMCG00008428
TU61309 other downstream 1225737 841883 ~ 848046 (-) True G49054
TU61225 other downstream 1346723 724880 ~ 727060 (-) True G48989
TU62046 other upstream 821650 2906675 ~ 2908665 (-) True G49605
TU62371 other upstream 1689558 3774583 ~ 3777354 (-) True AMCG00008547
TU62870 other upstream 3663865 5748890 ~ 5885450 (-) True G50267
TU62882 other upstream 3702725 5787750 ~ 5792584 (-) False AMCG00008608
TU63135 other upstream 4862864 6947889 ~ 7151472 (-) False G50476

Expression Profile