RNA id: TU61772


Basic Information

Item Value
RNA id TU61772
length 838
RNA type TUCP
GC content 0.57
exon number 3
gene id AMCG00008474
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 2073783 ~ 2085025 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACGCCCGGCGCCATTGTGGAGAGCACCGCGCCGGCCCGGGCTGTAAGCAGTGTGAGCGGCTGCGTGGAGAGACTCAGACACCGGACACAGCCGCTCCTCCCAGCCGCTCCGTGCGTGTGACGGACACAGAAGACCCTCCGAGCCGCCGCCATGGCCCGGGCCGCGCTGCCCCTGTGCGCCGCCCTGAGTCTCCTGCGCTGCGctgctgctgcagacTGTCCCATTGTGATTGACCCTCCCACAGTGGTGGTAAGATATGGAGATCCATCATCGGCCAACTGCACTGCAACACGGACAACCAGAGGAATGGGCTGGGAGGCATCGGTTGGATCCATAGACATGCAGACGGGTCCCCAGTCTCTCGTCTGGAGCGTCAGCAATCTGACTGACTGGGCTGTAGAGCCCAAATGCTACGCAAACTTTGATACGGAGCCAAAGCAGTGTTTGAAAAAGCTCAACATCCTTCTCTACAAGTATCCAGACAGTGTCTCCATCAGCTATAACCCGGCTGGTGCATTGGAGGAAGGGATGCCGTACGTGCAGCAGTGTGAGGTCCAGAGCATTGCCCCTGCTCAGAATCTCTCTGTGAACTGGTATAGATTTGGGGTGGTGATTCACAGAGAAACCTTCTCCACAGCCAGCAGTACAGGACCTGTGACTGTATACCCTAACCTCGTGATCACCCCCAACCGCACTGATGATGGAGCACAGTACAGCTGTGAGATAGAGATGAACCTGGGACCAGGAGGTCCGCAACCAAATCCTGTCATTAAGTCAAAGATCATCGTTACCACAGTGCTGTGTGAGTTCCACCGCCATGCATGTTGGGCAGATTGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61770 lncRNA downstream 3055 2068083 ~ 2075648 (-) True G49393
TU61771 lncRNA downstream 7831 2069790 ~ 2070872 (-) True G49394
TU61753 lncRNA downstream 12408 2054515 ~ 2066295 (-) True G49389
TU61756 lncRNA downstream 12408 2054515 ~ 2066295 (-) False G49389
TU61749 lncRNA downstream 15147 2057733 ~ 2063556 (-) False G49389
TU61798 lncRNA upstream 151521 2236527 ~ 2236861 (-) True G49414
TU61803 lncRNA upstream 274854 2359860 ~ 2360112 (-) True G49419
TU61850 lncRNA upstream 291999 2377005 ~ 2436757 (-) True G49462
TU61913 lncRNA upstream 551909 2636915 ~ 2702422 (-) True AMCG00008491
TU61973 lncRNA upstream 738235 2823241 ~ 2823976 (-) True G49547
AMCG00008471 mRNA downstream 126867 1950660 ~ 1951836 (-) True AMCG00008471
AMCG00008469 mRNA downstream 142284 1935304 ~ 1936419 (-) True AMCG00008469
AMCG00008470 mRNA downstream 164948 1896162 ~ 1913755 (-) True AMCG00008470
AMCG00008463 mRNA downstream 208495 1862614 ~ 1870208 (-) True AMCG00008463
AMCG00008462 mRNA downstream 219212 1846916 ~ 1859491 (-) True AMCG00008462
AMCG00008477 mRNA upstream 67605 2152611 ~ 2165650 (-) True AMCG00008477
AMCG00008482 mRNA upstream 84325 2169331 ~ 2172673 (-) True AMCG00008482
AMCG00008481 mRNA upstream 87830 2172836 ~ 2203443 (-) True AMCG00008481
AMCG00008480 mRNA upstream 123167 2208173 ~ 2212837 (-) True AMCG00008480
AMCG00008486 mRNA upstream 353703 2438709 ~ 2445212 (-) True AMCG00008486
TU61724 other downstream 197741 1879621 ~ 1880962 (-) True G49375
TU61698 other downstream 228421 1798845 ~ 1850282 (-) False AMCG00008462
TU61344 other downstream 1138051 931892 ~ 940652 (-) False AMCG00008428
TU61309 other downstream 1230657 841883 ~ 848046 (-) True G49054
TU61225 other downstream 1351643 724880 ~ 727060 (-) True G48989
TU62046 other upstream 821669 2906675 ~ 2908665 (-) True G49605
TU62371 other upstream 1689577 3774583 ~ 3777354 (-) True AMCG00008547
TU62870 other upstream 3663884 5748890 ~ 5885450 (-) True G50267
TU62882 other upstream 3702744 5787750 ~ 5792584 (-) False AMCG00008608
TU63135 other upstream 4862883 6947889 ~ 7151472 (-) False G50476

Expression Profile