RNA id: AMCG00008475


Basic Information

Item Value
RNA id AMCG00008475
length 2184
RNA type mRNA
GC content 0.52
exon number 10
gene id AMCG00008475
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 2088480 ~ 2107792 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACTGGGCTGCGCTGCAACAATGCGCTTTCATGGCTCTGTGTCTGCTCTACACGGctgcTGCTGCGTTCTGTCCCATTGAGATTAACCCTGAGAGAGTGGTGGTGAAATATGGAGATCCAGTATCGGCCAACTGCACTGTAACACGGACAACCAGAGGAATGGGCTGGGAGGCATCGGTTGGATCCATAGACATGCAGACGGGTCCCCAGTCTCTCGTCTGGAGTGCCAGCAGTCTGACTGACTGGGCTGTAGAGCCCAAATGCTACGCAAACTTTGATACGGAGCCAAAGCAGTGTTTGAAAAAGCTCAACATCCTTCTCTACAGTAAGTATCCTTATATTTTGATATGGGGCTGTAGCAGAGAATTTGGAAGCACCAAGCTGAGACTGGGACCAGAAGGACTACAAGCAAACCCTGTGATGAAGTCTGAGCCCCTCAACATCACAGTGCTGTGTGAGTTCCACCGCCATGCATctgctgctgcagacTGTCCCATTGAGATTGACCCTCCCACAGTGGTGGTGAAATATGGAGATCCAGTAACAGTTCACTGCACTGCAACACAGAGAACCAGAGAAATGGGCTGGGAGGTACCAAATGGATCCAGAAGCCTGCTACGAGGTAGTCAGTCTCTCCTCTGGAGTTTCAGCAATCTGACTGACTGGACCGCAGAGCCAAGATGCTACGCAAAGTTTGATACGGAGCCCAAGCAATGTTATAAAAAGCTCAGCATCCTTCACTACAGTAACTGCACTGATGGTGGATTAAAATTCAGTTGTGCGGCAGAGCTAAAACTGGGACAAGAAGGACCACAACCAAACCCTGTTATGAAGTCTGAGTCCCTCCACATCACAGAGCTGTctgctgctgcagacTGTCCCATTGTGATTGACCCTCCCACAGTGGTGGTGAGATATGGAGATCCAGTAACAGTTCACTGCACTGCAACACGCACAACCAGAGGAATGGGCTGGGAGGCATCGGTTGGATCCATAGACATGCAAATAGGTGTCCAGTCTGCCCTCTGGAGCGTCAGCAGTCTAACTGACTGGACAGCAGAGCCCAAGTGCTTCTCAAACTTTGATACGGAGCCCAAGCAGTGTGAGAAAAAGCCCAGCATCCTTCTCTACAAGTATCCAGATAGTGTCTCCATCAGGTCTGTCAGAAACACTGGTCCAATGGAGGAGGGGAGACCATACTGGCTGCTGTGTGAGGTCAAGAGCATCGCCCCAGTCCAGTATCTCTCTGTGAACTGGTATAGAGGGGGGACTTTAATCCACAATGACACCTTTGCTAACTTCACCACCAGAACACCTGTGGATGTACCTCGTACCCTCCTGATCACCCCAAGCTGCACCAATGATGGAGCACAGTACAGTTGTGAGGCagagctgaaactgggacaagGAGGGCCAAACCCTGTTATGAAATCTGAGCCCCTCCGTGCCACAGTGCTGTGTGAGTCCCACCACCAGGCAGGCActgctgctgcagtcTGTCCCATTGTGATTGACCCTCCCACAGTGGTGGTGAAATATGGAGATCCAGTATCGGCCAACTGCACTGCAACACGGACAACCAGAGGAATGGGCTGGGAGGCATCGGTTGGATCCACAGGCATTAAGACTGGTCCCCAGTCTCTCCTCTGGGGCGTCAGCAATCTGACTGACTGGACTGTAGAGCCCACATGCTTCTCAAACTTTGATACGGATCCAAAGCAGTGCGGGAAAAAGCTCAACATCAGTCTCTACAAGTATCCAGACAGTGTCTCTATCAGCTCTGTGGGACACACTGGTCCAATGGAGGAGGGGAGACAGTACTGGCTGCTGTGTGAAGTCAAGAGCATTGCCCCAGTCCAGTATCTCTCTGTGAACTGGTATAGAGAGGGAGCTTTAATCTACAATGAAATCTTTCCTGAATTCACTGCCAGAACACCTGTGGATGTGTCTCATCCCCTCCTGATCACCCCCAGCTGCACCAATGGTGGAGTCCACTACATGTGTGAGGCAGAGCTGAAACTGGGACCAGGAGGACCACAACCAAACCATGTGATGAAGTCTGAGATCCTCCGTGCCACAATGCTGTGTGAGTCCCACCGCCATGCATATTGGGCAGATTGCACTGGAGCACACGGGTCTGAACACGGGCTGGAAAGCCAGGAAGTGTCCCTGTACTCTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61586 lncRNA upstream 12831 2068057 ~ 2075649 (+) True AMCG00008473
TU61609 lncRNA upstream 178061 1908823 ~ 1910419 (+) True G49294
TU61564 lncRNA upstream 232224 1799861 ~ 1856256 (+) True G49261
TU61648 lncRNA downstream 55527 2163319 ~ 2208477 (+) True G49321
TU61672 lncRNA downstream 104637 2212429 ~ 2213493 (+) True G49341
TU61817 lncRNA downstream 337393 2445185 ~ 2464667 (+) True G49431
TU61966 lncRNA downstream 704382 2812174 ~ 2812893 (+) True G49541
TU62010 lncRNA downstream 778039 2885831 ~ 2886138 (+) True G49582
AMCG00008473 mRNA upstream 16434 2062556 ~ 2072046 (+) False AMCG00008473
AMCG00008472 mRNA upstream 41543 2030788 ~ 2046937 (+) True AMCG00008472
AMCG00008468 mRNA upstream 194253 1891096 ~ 1894227 (+) True AMCG00008468
AMCG00008460 mRNA upstream 198713 1884367 ~ 1889767 (+) True AMCG00008460
AMCG00008458 mRNA upstream 207518 1874037 ~ 1880962 (+) True AMCG00008458
AMCG00008476 mRNA downstream 26054 2133846 ~ 2143394 (+) False AMCG00008476
AMCG00008478 mRNA downstream 148665 2256457 ~ 2257456 (+) True AMCG00008478
AMCG00008479 mRNA downstream 168999 2276791 ~ 2277090 (+) True AMCG00008479
AMCG00008484 mRNA downstream 287272 2395064 ~ 2402598 (+) True AMCG00008484
AMCG00008485 mRNA downstream 312548 2420340 ~ 2422009 (+) True AMCG00008485
TU61614 other upstream 151978 1930654 ~ 1936502 (+) True G49298
TU61499 other upstream 764211 1322811 ~ 1324269 (+) True G49208
TU61359 other upstream 1119897 965838 ~ 968583 (+) True AMCG00008423
TU61256 other upstream 1208967 876554 ~ 879513 (+) True G49013
TU61033 other upstream 1500034 587280 ~ 588446 (+) True G48846
TU61627 other downstream 19923 2127715 ~ 2143310 (+) True AMCG00008476
TU61670 other downstream 101691 2209483 ~ 2211514 (+) True G49340
TU61936 other downstream 658087 2765879 ~ 2770044 (+) True G49523
TU62012 other downstream 778974 2886766 ~ 2888896 (+) True G49583
TU62528 other downstream 2048296 4156088 ~ 4160062 (+) True G49980

Expression Profile