RNA id: TU61588


Basic Information

Item Value
RNA id TU61588
length 1455
RNA type TUCP
GC content 0.46
exon number 3
gene id AMCG00008475
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 2088480 ~ 2107792 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCTGAGTCACGTAGAGGGGGCTGTGTGAGAGGGCTTCCTGTGCGTATAtcctgttttatatttaatgcgCAAAAATGTCTGCTGCATAAGTTGCTACATAGAAACTCATTCTTAACAGGAATGTTTCAGGGTGACGGGGCCTTTAGGAGTAAGGTGGGGACGGGTGTATTAACCGTGTCAAAATATTTTCCTGCAGACCATGTACTCCCACCTCCTCAGTCATGATTTCAGTTCAAAACTAACCCCATTGTAAATGATGTAGAAAAGGATGAGTGAAGGGAGATGCTGATCTGATAGGATACAGCAAACAAGCTGCAATGGACAAATAGTTTTTAATTCATCGTTCTGCAGTTATTCGTTTTATTACTTTCGATTGGcttaggactttaaactggagtttaGCTTGTTTACCTTGTATTGATATCAgaggaaataataattgctaAATACAGTCCtgctatatacagttaggtccataaatatttggacagtgacacaattgtcatcatttttgaaaatggatttgaaaggaaacaatcaagatgtgctttaagtgcagactttcatctttaatgtgagggtagttgaggtagatgctgggtttcttccctggtgatgctctgccaggcctgcactgcagctgtctttagtccctgcttgtttttggggcattttgcctcaAAACTCACATTTAGACCCATGTCAACACTGCAGGTTTAGAGAGACAGTGAAATCTTCTCGGGTCAGAACATGTTTGGGCAACCCTTGCAATTTAGTTCCTCAGTGATGAtgtcgttgttgtttttcagctgcTGCTGCGTTCTGTCCCATTGAGATTAACCCTGAGAGAGTGGTGGTGAAATATGGAGATCCAGTATCGGCCAACTGCACTGTAACACGGACAACCAGAGGAATGGGCTGGGAGGCATCGGTTGGATCCATAGACATGCAGACGGGTCCCCAGTCTCTCGTCTGGAGTGCCAGCAGTCTGACTGACTGGGCTGTAGAGCCCAAATGCTACGCAAACTTTGATACGGAGCCAAAGCAGTGTTTGAAAAAGCTCAACATCCTTCTCTACAAGTATCCAGACAGAGTCTCTATCAGCTCTGTGGGACACACTGGTCCAATGGAGGAGGGGAGACAGTACCTGCTGCAGTGTGATGTCCAGAGCATCGCCCCAGTCCAGTATCTCTCTGTGAACTGGTATAGAGGGGGGGCATTAATCCACACAGAAACCTTCACTAGAAACACCACTAGAACACCTGTGAATGTGTCTCCTACCCTCCCCATAACCCCCAATCGCACTGATGATAGAGTTCTGTACATGTGTGAGGCAGAGCTGAGACTGGGACCAGAAGGACTACAAGCAAACCCTGTGATGAAGTCTGAGCCCCTCAACATCACAGTGCTGTacTGTCCCATTGTGATTGACCCTCCCACAGTGGTGGTGAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61586 lncRNA upstream 16312 2068057 ~ 2075649 (+) True AMCG00008473
TU61609 lncRNA upstream 181542 1908823 ~ 1910419 (+) True G49294
TU61564 lncRNA upstream 235705 1799861 ~ 1856256 (+) True G49261
TU61648 lncRNA downstream 57746 2163319 ~ 2208477 (+) True G49321
TU61672 lncRNA downstream 106856 2212429 ~ 2213493 (+) True G49341
TU61817 lncRNA downstream 339612 2445185 ~ 2464667 (+) True G49431
TU61966 lncRNA downstream 706601 2812174 ~ 2812893 (+) True G49541
TU62010 lncRNA downstream 780258 2885831 ~ 2886138 (+) True G49582
AMCG00008473 mRNA upstream 19915 2062556 ~ 2072046 (+) False AMCG00008473
AMCG00008472 mRNA upstream 45024 2030788 ~ 2046937 (+) True AMCG00008472
AMCG00008468 mRNA upstream 197734 1891096 ~ 1894227 (+) True AMCG00008468
AMCG00008460 mRNA upstream 202194 1884367 ~ 1889767 (+) True AMCG00008460
AMCG00008458 mRNA upstream 210999 1874037 ~ 1880962 (+) True AMCG00008458
AMCG00008476 mRNA downstream 28273 2133846 ~ 2143394 (+) False AMCG00008476
AMCG00008478 mRNA downstream 150884 2256457 ~ 2257456 (+) True AMCG00008478
AMCG00008479 mRNA downstream 171218 2276791 ~ 2277090 (+) True AMCG00008479
AMCG00008484 mRNA downstream 289491 2395064 ~ 2402598 (+) True AMCG00008484
AMCG00008485 mRNA downstream 314767 2420340 ~ 2422009 (+) True AMCG00008485
TU61614 other upstream 155459 1930654 ~ 1936502 (+) True G49298
TU61499 other upstream 767692 1322811 ~ 1324269 (+) True G49208
TU61359 other upstream 1123378 965838 ~ 968583 (+) True AMCG00008423
TU61256 other upstream 1212448 876554 ~ 879513 (+) True G49013
TU61033 other upstream 1503515 587280 ~ 588446 (+) True G48846
TU61627 other downstream 22142 2127715 ~ 2143310 (+) True AMCG00008476
TU61670 other downstream 103910 2209483 ~ 2211514 (+) True G49340
TU61936 other downstream 660306 2765879 ~ 2770044 (+) True G49523
TU62012 other downstream 781193 2886766 ~ 2888896 (+) True G49583
TU62528 other downstream 2050515 4156088 ~ 4160062 (+) True G49980

Expression Profile