RNA id: AMCG00008476



Basic Information


Item Value
RNA id AMCG00008476
length 846
RNA type mRNA
GC content 0.51
exon number 3
gene id AMCG00008476
representative False

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 2127715 ~ 2143394 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCTGTCCTCACCGGCATCCAGGATCAATGGACCAGGAGCGGCCGTCACGGCTGCCAGCTCAAGTCATGACACGGCGATGACCCTGGATGTGTTGGACActgctgctgcagacTGTCCCATTGAGATTAACCCTGAGAGAGTGGTGGTGAAATATGGAGATCCAGTATCGGCCAACTGCACTGTAACACGGACAACCAGAGGAATGGGCTGGGAGGCATCGGTTGGATCCATAGACATGCAGACGGGTCCCCAGTCTCTCGTCTGGAGCGTCAGCAGTCTGACTGACTGGAATGTAGAGCCCAAATGCTACGCAAACTTTGATACGGAGCCAAAGCAGTGTTTGAAAAAGCTCAACATCAGTCTCTACAAGTATCCAGACAGTGTCTCCATCAGCAATAGTCCAAGTGGTGCAATGGAGGAGGGGAGACCGTACCGGCTGCAGTGTGATGTCCACAGAGTTGCCCCTGTTCAGTATCTCTCTGTGAGCTGGTATAGATTTGGGGTGTTACTCTACAATGAAACCTTCTCTGAAGACACCACGAGAACACCTGTGGATGTATCTCCTACCTTCTTGATCACACTCAGTCACACTGATAATAAAGCTCAGTATATGTGTGTGGCAGAGCTGAGACTGGGACCAGGAGGACCACCACAAAAACTTACTAAGATCTCTGATCCCCTCGTTACCACAGTGCTGTGTGAGTTCCACCGCCATGCATGTTGGGCAGATTGGTGCTTGATTTCTGCACAGGCAGTTCTGACAGTTTTGCATATCGCATCTCAGGACGTCCTGATCAAAGCGAAGCGAGGGCTGTCTGAGCAGTGCTGTTGCGTTCCCAAGTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU61586 lncRNA upstream 58197 2068057 ~ 2075649 (+) True AMCG00008473
TU61609 lncRNA upstream 223427 1908823 ~ 1910419 (+) True G49294
TU61576 lncRNA upstream 285108 1815584 ~ 1848738 (+) True G49270
TU61582 lncRNA upstream 294842 1838186 ~ 1839004 (+) True G49271
TU61567 lncRNA upstream 327819 1803825 ~ 1806027 (+) True G49264
TU61648 lncRNA downstream 19925 2163319 ~ 2208477 (+) True G49321
TU61672 lncRNA downstream 69035 2212429 ~ 2213493 (+) True G49341
TU61817 lncRNA downstream 301791 2445185 ~ 2464667 (+) True G49431
TU61966 lncRNA downstream 668780 2812174 ~ 2812893 (+) True G49541
TU62010 lncRNA downstream 742437 2885831 ~ 2886138 (+) True G49582
AMCG00008475 mRNA upstream 26054 2088480 ~ 2107792 (+) True AMCG00008475
AMCG00008473 mRNA upstream 61800 2062556 ~ 2072046 (+) False AMCG00008473
AMCG00008472 mRNA upstream 86909 2030788 ~ 2046937 (+) True AMCG00008472
AMCG00008468 mRNA upstream 239619 1891096 ~ 1894227 (+) True AMCG00008468
AMCG00008460 mRNA upstream 244079 1884367 ~ 1889767 (+) True AMCG00008460
AMCG00008478 mRNA downstream 113063 2256457 ~ 2257456 (+) True AMCG00008478
AMCG00008479 mRNA downstream 133397 2276791 ~ 2277090 (+) True AMCG00008479
AMCG00008484 mRNA downstream 251670 2395064 ~ 2402598 (+) True AMCG00008484
AMCG00008485 mRNA downstream 276946 2420340 ~ 2422009 (+) True AMCG00008485
AMCG00008483 mRNA downstream 281001 2424395 ~ 2430781 (+) True AMCG00008483
TU61588 other upstream 28273 2091961 ~ 2105573 (+) False AMCG00008475
TU61614 other upstream 197344 1930654 ~ 1936502 (+) True G49298
TU61499 other upstream 809577 1322811 ~ 1324269 (+) True G49208
TU61359 other upstream 1165263 965838 ~ 968583 (+) True AMCG00008423
TU61256 other upstream 1254333 876554 ~ 879513 (+) True G49013
TU61670 other downstream 66089 2209483 ~ 2211514 (+) True G49340
TU61936 other downstream 622485 2765879 ~ 2770044 (+) True G49523
TU62012 other downstream 743372 2886766 ~ 2888896 (+) True G49583
TU62528 other downstream 2012694 4156088 ~ 4160062 (+) True G49980
TU62530 other downstream 2018664 4162058 ~ 4165483 (+) True G49982

Expression Profile