RNA id: AMCG00008479



Basic Information


Item Value
RNA id AMCG00008479
length 300
RNA type mRNA
GC content 0.63
exon number 1
gene id AMCG00008479
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 2276791 ~ 2277090 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGATGGAACCGCCACCTTGCTCCAAAAAGAGCCTGTCTCTGTCGCTGCCCGTGCCCCGGGAAGGGCAGGCGACGCTGAAGCCTCCGCAGCACCTATGGAGGCAACCCCGGACTCCCATCAAAATCAAACACCGGGGCTACTCGGATACCGACCGGCACCATCACCGGCAGATCGAGCGCTCCAATGCCATGGACACCAGCGACCGGCCGGGGCTCAAGAAGTCTCGCATGTCCTGGCCCTCCTCCTTCCACGGGACGACCAGCACCTCGAGTGCCAACTGCACCAGCACCAAACGGTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU61672 lncRNA upstream 63298 2212429 ~ 2213493 (+) True G49341
TU61648 lncRNA upstream 68314 2163319 ~ 2208477 (+) True G49321
TU61586 lncRNA upstream 201142 2068057 ~ 2075649 (+) True AMCG00008473
TU61609 lncRNA upstream 366372 1908823 ~ 1910419 (+) True G49294
TU61582 lncRNA upstream 437787 1838186 ~ 1839004 (+) True G49271
TU61817 lncRNA downstream 168095 2445185 ~ 2464667 (+) True G49431
TU61966 lncRNA downstream 535084 2812174 ~ 2812893 (+) True G49541
TU62010 lncRNA downstream 608741 2885831 ~ 2886138 (+) True G49582
TU62038 lncRNA downstream 632572 2909662 ~ 2910628 (+) True G49598
TU62039 lncRNA downstream 633604 2910694 ~ 2910939 (+) True G49599
AMCG00008478 mRNA upstream 19335 2256457 ~ 2257456 (+) True AMCG00008478
AMCG00008476 mRNA upstream 133397 2133846 ~ 2143394 (+) False AMCG00008476
AMCG00008475 mRNA upstream 168999 2088480 ~ 2107792 (+) True AMCG00008475
AMCG00008473 mRNA upstream 204745 2062556 ~ 2072046 (+) False AMCG00008473
AMCG00008472 mRNA upstream 229854 2030788 ~ 2046937 (+) True AMCG00008472
AMCG00008484 mRNA downstream 117974 2395064 ~ 2402598 (+) True AMCG00008484
AMCG00008485 mRNA downstream 143250 2420340 ~ 2422009 (+) True AMCG00008485
AMCG00008483 mRNA downstream 147305 2424395 ~ 2430781 (+) True AMCG00008483
AMCG00008487 mRNA downstream 238139 2515229 ~ 2516509 (+) True AMCG00008487
AMCG00008489 mRNA downstream 339373 2616463 ~ 2630199 (+) True AMCG00008489
TU61670 other upstream 65277 2209483 ~ 2211514 (+) True G49340
TU61627 other upstream 133481 2127715 ~ 2143310 (+) True AMCG00008476
TU61588 other upstream 171218 2091961 ~ 2105573 (+) False AMCG00008475
TU61614 other upstream 340289 1930654 ~ 1936502 (+) True G49298
TU61499 other upstream 952522 1322811 ~ 1324269 (+) True G49208
TU61936 other downstream 488789 2765879 ~ 2770044 (+) True G49523
TU62012 other downstream 609676 2886766 ~ 2888896 (+) True G49583
TU62528 other downstream 1878998 4156088 ~ 4160062 (+) True G49980
TU62530 other downstream 1884968 4162058 ~ 4165483 (+) True G49982
TU62655 other downstream 2284901 4561991 ~ 4572734 (+) True AMCG00008580

Expression Profile