RNA id: AMCG00008483


Basic Information

Item Value
RNA id AMCG00008483
length 1434
RNA type mRNA
GC content 0.62
exon number 9
gene id AMCG00008483
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 2424395 ~ 2430781 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCTGTTCTTTCCCCTGCAGACAAGCAGAACGACGTGGAGATCCCGTCGCCCACGCAGAAGGAGCgcgagaagaagaagaagcagccCATGTGTCAGATCAGCGGCGTCAAGAAGCTCATGCACAGCTCCAGCCTGACCAACTCCACCGCACCCAGGTTCGGCGTCAAGACCGACCAGGAGGACTCGCTGGCCAGGTTCGGGGAGACTAAAACACACTGCATGTTTGTCACATTGCACACGAAACACAAGAGAGACTCCCGTCAGTGTGACTCTAACCCgggtctgtttgtgtgtttcaatcAGGAGCTGGACGACTTGAACAAGTGGGGCCTTAACATCTTTCGAGTGGCCGAGTTCTCCAACAACAGACCACTCAGCTGTATAATGTTCGCCATCTTTCAGgagcGAGATCTGATGAAGACCTTTAAGATCCCAGTGGACACCTTCATCACCTACATCATGACCCTGGAGGACCACTACCACGCCGACGTGGCCTACCACAACAGCCTGCACGCCGCCGACGTCATGCAGTCCACACACGTGCTGCTGTCCACGCCTGCGCTCGACGCGGTGTTCACAGACCTGGAGATCCTGGCCGCCTTATTCGCGGCTGCCATCCATGACGTGGACCACCCCGGGGTCTCCAACCAGTTCCTCATCAACACCAACTCGGAGCTGGCCCTGATGTACAACGATGAGTCGGTGCTGGAGAACCACCACCTGGCCgtcCTGGCCACCGACATGTCTAAACACATGAGCCTGTTGGCCGACCTCAAAACCATGGTGGAGACCAAGAAGGTGACGAGCTCAGGGGTGCTGCTGCTGGACCACTACACTGACCGCATACAGATCTACCGCCAGTGGACCGACCGCATCATGGAGGAGTTCTTCCGGCAGGGGGACAAGGAGCGCGAGCGGGGCATGGAGATCAGCCCCATGTGTGATAAGCACACGGCGTCGGTGGAGAAGTCGCAGgTGGGCTTCATCGATTACATCGTCCACCCGCTGTGGGAGACGTGGGCTGACCTGGTGCACCCGGACGCGCAGGACATCCTGGACGCCCTGGAGGACAACCGGGACTGGTACCAGAGCATGATCCCCCAGAGCCCCTCGCCGCCCCCCGACGACCCGGACAAGGAGCCCGACGCCTGCCTGGACAAGTTCCAGTTCGAGCTgaccctggaggaggagggcgAGGACCCTGAGGGCCGGGGCAACGGGGGCTCGCCCTGCCACAACCACCTGGGGGAGAACTGCTGCTCCCCGGGGCCCCCCGAGCACGGCGCCGGCCGCGGCCCCCCGGGACAGGAGGGCGGCCTGGGGGAGTCGGgcgtggtggtggtggtggtgggcgAGAACGGACACTCCGAGGGGAGCCCTgaggaggaggacgacgaggaggagctgctgtcctCCCCCGCCGAGACATGA

Function

GO:

id name namespace
GO:0002040 sprouting angiogenesis biological_process
GO:0001525 angiogenesis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61672 lncRNA upstream 210902 2212429 ~ 2213493 (+) True G49341
TU61648 lncRNA upstream 215918 2163319 ~ 2208477 (+) True G49321
TU61586 lncRNA upstream 348746 2068057 ~ 2075649 (+) True AMCG00008473
TU61609 lncRNA upstream 513976 1908823 ~ 1910419 (+) True G49294
TU61582 lncRNA upstream 585391 1838186 ~ 1839004 (+) True G49271
TU61817 lncRNA downstream 14404 2445185 ~ 2464667 (+) True G49431
TU61966 lncRNA downstream 381393 2812174 ~ 2812893 (+) True G49541
TU62010 lncRNA downstream 455050 2885831 ~ 2886138 (+) True G49582
TU62038 lncRNA downstream 478881 2909662 ~ 2910628 (+) True G49598
TU62039 lncRNA downstream 479913 2910694 ~ 2910939 (+) True G49599
AMCG00008485 mRNA upstream 2386 2420340 ~ 2422009 (+) True AMCG00008485
AMCG00008484 mRNA upstream 21797 2395064 ~ 2402598 (+) True AMCG00008484
AMCG00008479 mRNA upstream 147305 2276791 ~ 2277090 (+) True AMCG00008479
AMCG00008478 mRNA upstream 166939 2256457 ~ 2257456 (+) True AMCG00008478
AMCG00008476 mRNA upstream 281001 2133846 ~ 2143394 (+) False AMCG00008476
AMCG00008487 mRNA downstream 84448 2515229 ~ 2516509 (+) True AMCG00008487
AMCG00008489 mRNA downstream 185682 2616463 ~ 2630199 (+) True AMCG00008489
AMCG00008493 mRNA downstream 285039 2715820 ~ 2720661 (+) True AMCG00008493
AMCG00008499 mRNA downstream 357087 2787868 ~ 2793880 (+) True AMCG00008499
AMCG00008498 mRNA downstream 367759 2798540 ~ 2811299 (+) True AMCG00008498
TU61670 other upstream 212881 2209483 ~ 2211514 (+) True G49340
TU61627 other upstream 281085 2127715 ~ 2143310 (+) True AMCG00008476
TU61588 other upstream 318822 2091961 ~ 2105573 (+) False AMCG00008475
TU61614 other upstream 487893 1930654 ~ 1936502 (+) True G49298
TU61499 other upstream 1100126 1322811 ~ 1324269 (+) True G49208
TU61936 other downstream 335098 2765879 ~ 2770044 (+) True G49523
TU62012 other downstream 455985 2886766 ~ 2888896 (+) True G49583
TU62528 other downstream 1725307 4156088 ~ 4160062 (+) True G49980
TU62530 other downstream 1731277 4162058 ~ 4165483 (+) True G49982
TU62655 other downstream 2131210 4561991 ~ 4572734 (+) True AMCG00008580

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000113_00081245_00102196.mRNA True 3818 mRNA 0.50 19 CI01000113 80600 ~ 102729 (+)