RNA id: AMCG00008484


Basic Information

Item Value
RNA id AMCG00008484
length 468
RNA type mRNA
GC content 0.61
exon number 6
gene id AMCG00008484
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 2395064 ~ 2402598 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGCAcacagccaacacacacactcacattttcAAACAGGACGTCCCATATGAGGCTCAGACAGTCTCCCCTTCACCAGCCCTGCCCCCGCCACACACACGCATACCAagccccccggccccccaggCCCTGACCCCTCTGACCTGCGCTCCCCGCCCGCCTGACCTCATGACGTCAAGCCAGCGGCGCGAGTCGTTCTTGTACCGCTCCGACTCGGACTACGACATGTCCCCCAAGACCATGTCCCGCAACTCGTCCATCACCAGCGAGGCgCATGCTGAGGATCTCATAGTGACTCCTTTTGCTCAGgtgtTGGCAAGCCTCCGCTCAGTAAGAAAGGAGACGTACCAACAGCTGGCCAAAGAAAcgctggaggagctggactggTGTCTGGACCAGCTGGAGACGATCCAGACGTACCGCTCGGTCAGCGAGATGGCGTCCAACAAGacGGGGGCGCGGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61672 lncRNA upstream 181571 2212429 ~ 2213493 (+) True G49341
TU61648 lncRNA upstream 186587 2163319 ~ 2208477 (+) True G49321
TU61586 lncRNA upstream 319415 2068057 ~ 2075649 (+) True AMCG00008473
TU61609 lncRNA upstream 484645 1908823 ~ 1910419 (+) True G49294
TU61582 lncRNA upstream 556060 1838186 ~ 1839004 (+) True G49271
TU61817 lncRNA downstream 42587 2445185 ~ 2464667 (+) True G49431
TU61966 lncRNA downstream 409576 2812174 ~ 2812893 (+) True G49541
TU62010 lncRNA downstream 483233 2885831 ~ 2886138 (+) True G49582
TU62038 lncRNA downstream 507064 2909662 ~ 2910628 (+) True G49598
TU62039 lncRNA downstream 508096 2910694 ~ 2910939 (+) True G49599
AMCG00008479 mRNA upstream 117974 2276791 ~ 2277090 (+) True AMCG00008479
AMCG00008478 mRNA upstream 137608 2256457 ~ 2257456 (+) True AMCG00008478
AMCG00008476 mRNA upstream 251670 2133846 ~ 2143394 (+) False AMCG00008476
AMCG00008475 mRNA upstream 287272 2088480 ~ 2107792 (+) True AMCG00008475
AMCG00008473 mRNA upstream 323018 2062556 ~ 2072046 (+) False AMCG00008473
AMCG00008485 mRNA downstream 17742 2420340 ~ 2422009 (+) True AMCG00008485
AMCG00008483 mRNA downstream 21797 2424395 ~ 2430781 (+) True AMCG00008483
AMCG00008487 mRNA downstream 112631 2515229 ~ 2516509 (+) True AMCG00008487
AMCG00008489 mRNA downstream 213865 2616463 ~ 2630199 (+) True AMCG00008489
AMCG00008493 mRNA downstream 313222 2715820 ~ 2720661 (+) True AMCG00008493
TU61670 other upstream 183550 2209483 ~ 2211514 (+) True G49340
TU61627 other upstream 251754 2127715 ~ 2143310 (+) True AMCG00008476
TU61588 other upstream 289491 2091961 ~ 2105573 (+) False AMCG00008475
TU61614 other upstream 458562 1930654 ~ 1936502 (+) True G49298
TU61499 other upstream 1070795 1322811 ~ 1324269 (+) True G49208
TU61936 other downstream 363281 2765879 ~ 2770044 (+) True G49523
TU62012 other downstream 484168 2886766 ~ 2888896 (+) True G49583
TU62528 other downstream 1753490 4156088 ~ 4160062 (+) True G49980
TU62530 other downstream 1759460 4162058 ~ 4165483 (+) True G49982
TU62655 other downstream 2159393 4561991 ~ 4572734 (+) True AMCG00008580

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00050548 False 5068 mRNA 0.47 15 NC_007114.7 46628885 ~ 46752545 (+)
mexican tetra (Astyanax mexicanus) TU444486 False 1685 lncRNA 0.59 2 NW_019172892.1 861933 ~ 996721 (-)