RNA id: AMCG00008485


Basic Information

Item Value
RNA id AMCG00008485
length 432
RNA type mRNA
GC content 0.58
exon number 4
gene id AMCG00008485
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 2420340 ~ 2422009 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCGGAGATCAACTACCTGCTCTCTGTGTCCTGGAGCTACATCAAGGAGTTCGGGGTTGTAATTCGATTCAACCAACAAATTGCTTTCAGCTCTGCCCGAGATCCTTTCATCTGCGCTCTTTGTAGTGTCATTATCGCTCGGGCTGTGTGCGTATCTGAAAGTTTCAGGAGGCGTTCGGGGCCTGTCTCCCGCTCGTCTGACCGGGTGTGGCGTTCCCATGCCGGTGCTGTGTTACGTGGCGTGAAGGCCGGGGGCGTGGGAGCGACCCGGCGCTGTCACTCTGAAGCCCCTTTCAAGAGGATGCTGAACCGTGAGCTGACCCACCTGTCAGAGATGAGCAGGTCGGGCAACCAGGTGTCCGAGTACATCTCCAGCACGTTCCTAGGTGAGTTACCGACTGGCTCTCCCCGGGCCCCCTGTGTCCCCTGA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0046872 metal ion binding molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61672 lncRNA upstream 206847 2212429 ~ 2213493 (+) True G49341
TU61648 lncRNA upstream 211863 2163319 ~ 2208477 (+) True G49321
TU61586 lncRNA upstream 344691 2068057 ~ 2075649 (+) True AMCG00008473
TU61609 lncRNA upstream 509921 1908823 ~ 1910419 (+) True G49294
TU61582 lncRNA upstream 581336 1838186 ~ 1839004 (+) True G49271
TU61817 lncRNA downstream 23176 2445185 ~ 2464667 (+) True G49431
TU61966 lncRNA downstream 390165 2812174 ~ 2812893 (+) True G49541
TU62010 lncRNA downstream 463822 2885831 ~ 2886138 (+) True G49582
TU62038 lncRNA downstream 487653 2909662 ~ 2910628 (+) True G49598
TU62039 lncRNA downstream 488685 2910694 ~ 2910939 (+) True G49599
AMCG00008484 mRNA upstream 17742 2395064 ~ 2402598 (+) True AMCG00008484
AMCG00008479 mRNA upstream 143250 2276791 ~ 2277090 (+) True AMCG00008479
AMCG00008478 mRNA upstream 162884 2256457 ~ 2257456 (+) True AMCG00008478
AMCG00008476 mRNA upstream 276946 2133846 ~ 2143394 (+) False AMCG00008476
AMCG00008475 mRNA upstream 312548 2088480 ~ 2107792 (+) True AMCG00008475
AMCG00008483 mRNA downstream 2386 2424395 ~ 2430781 (+) True AMCG00008483
AMCG00008487 mRNA downstream 93220 2515229 ~ 2516509 (+) True AMCG00008487
AMCG00008489 mRNA downstream 194454 2616463 ~ 2630199 (+) True AMCG00008489
AMCG00008493 mRNA downstream 293811 2715820 ~ 2720661 (+) True AMCG00008493
AMCG00008499 mRNA downstream 365859 2787868 ~ 2793880 (+) True AMCG00008499
TU61670 other upstream 208826 2209483 ~ 2211514 (+) True G49340
TU61627 other upstream 277030 2127715 ~ 2143310 (+) True AMCG00008476
TU61588 other upstream 314767 2091961 ~ 2105573 (+) False AMCG00008475
TU61614 other upstream 483838 1930654 ~ 1936502 (+) True G49298
TU61499 other upstream 1096071 1322811 ~ 1324269 (+) True G49208
TU61936 other downstream 343870 2765879 ~ 2770044 (+) True G49523
TU62012 other downstream 464757 2886766 ~ 2888896 (+) True G49583
TU62528 other downstream 1734079 4156088 ~ 4160062 (+) True G49980
TU62530 other downstream 1740049 4162058 ~ 4165483 (+) True G49982
TU62655 other downstream 2139982 4561991 ~ 4572734 (+) True AMCG00008580

Expression Profile