RNA id: AMCG00008487



Basic Information


Item Value
RNA id AMCG00008487
length 816
RNA type mRNA
GC content 0.70
exon number 3
gene id AMCG00008487
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 2515229 ~ 2516509 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTCACGACTGGTGGCGGGCCTCCCTGTCCTCCCCGTGTCCCTCGGCGCTCCGGGGCAAGGCGAGGTGCTGCCCCAGGTGGCGTCGGTGGACGAGGTGAACATCCTGACGTACGGGGTGCTGCAGTTCAGCCAGACGCTGCACGACACCTACCACAGCACCAGGGCCAAGATGGCGCGCATCTCCCGCAGCCTGGACCTCAAGGAGAGCCGGCTGGGGCTGCTGGGGCGGCGCGCCGAGGACGCCAAGCGCGAGGACGAGCGGCTGAGGACGAGCGTCGCCCGGCTGGAGGTGAGGCGCGCGGGCGGTGGTCCGGTTAGGGAGGCATTTTCCAGACATGGCCGGCCTGTAACCTCTCGCCGCCGTGTCGTGCAGGCAGAGGAGGTGCGGCTGCGGCACGAGGCCCGGGGGCTCGAGGCGGTGTTCGACGCGGTGCTGCGGGACGAGCGGGCGCTGCAGGGGCAGGTGAAGGCGGTGGAGAGAGGCGTGGGCACCGCGGAGAGGGACTCGGCGCCGGCTCGGATCACCGCACTGAAGCTCTGTAGCCGCACTGCTGGAGAGGAGGTCTGCTCCTCAGCCCGGCATTCGTTTGTGCCCCCGGTACAGGAGCTGAGCCGGAGACACCAGGACACGCTGCGGGGGCTGCTGGGCCTGGTGGGGCAGCAGAAGGCCCAGCTAGAGCAGCAGGACGGGCAGCTGGAGCGACTGCAACGACTGGTGAGTGCCCGTCCTCGACCGGTTCCTCTACAGGGGCGACACAAGCCACTCCGGGGACCACACCGGCCCGGGGGGAAGGTTCACTCCAGATCAACCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU61817 lncRNA upstream 50562 2445185 ~ 2464667 (+) True G49431
TU61672 lncRNA upstream 301736 2212429 ~ 2213493 (+) True G49341
TU61648 lncRNA upstream 306752 2163319 ~ 2208477 (+) True G49321
TU61586 lncRNA upstream 439580 2068057 ~ 2075649 (+) True AMCG00008473
TU61609 lncRNA upstream 604810 1908823 ~ 1910419 (+) True G49294
TU61966 lncRNA downstream 295665 2812174 ~ 2812893 (+) True G49541
TU62010 lncRNA downstream 369322 2885831 ~ 2886138 (+) True G49582
TU62038 lncRNA downstream 393153 2909662 ~ 2910628 (+) True G49598
TU62039 lncRNA downstream 394185 2910694 ~ 2910939 (+) True G49599
TU62082 lncRNA downstream 511469 3027978 ~ 3042595 (+) True G49636
AMCG00008483 mRNA upstream 84448 2424395 ~ 2430781 (+) True AMCG00008483
AMCG00008485 mRNA upstream 93220 2420340 ~ 2422009 (+) True AMCG00008485
AMCG00008484 mRNA upstream 112631 2395064 ~ 2402598 (+) True AMCG00008484
AMCG00008479 mRNA upstream 238139 2276791 ~ 2277090 (+) True AMCG00008479
AMCG00008478 mRNA upstream 257773 2256457 ~ 2257456 (+) True AMCG00008478
AMCG00008489 mRNA downstream 99954 2616463 ~ 2630199 (+) True AMCG00008489
AMCG00008493 mRNA downstream 199311 2715820 ~ 2720661 (+) True AMCG00008493
AMCG00008499 mRNA downstream 271359 2787868 ~ 2793880 (+) True AMCG00008499
AMCG00008498 mRNA downstream 282031 2798540 ~ 2811299 (+) True AMCG00008498
AMCG00008497 mRNA downstream 298887 2815396 ~ 2823096 (+) True AMCG00008497
TU61670 other upstream 303715 2209483 ~ 2211514 (+) True G49340
TU61627 other upstream 371919 2127715 ~ 2143310 (+) True AMCG00008476
TU61588 other upstream 409656 2091961 ~ 2105573 (+) False AMCG00008475
TU61614 other upstream 578727 1930654 ~ 1936502 (+) True G49298
TU61499 other upstream 1190960 1322811 ~ 1324269 (+) True G49208
TU61936 other downstream 249370 2765879 ~ 2770044 (+) True G49523
TU62012 other downstream 370257 2886766 ~ 2888896 (+) True G49583
TU62528 other downstream 1639579 4156088 ~ 4160062 (+) True G49980
TU62530 other downstream 1645549 4162058 ~ 4165483 (+) True G49982
TU62655 other downstream 2045482 4561991 ~ 4572734 (+) True AMCG00008580

Expression Profile