RNA id: AMCG00008493


Basic Information

Item Value
RNA id AMCG00008493
length 1818
RNA type mRNA
GC content 0.61
exon number 8
gene id AMCG00008493
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 2715820 ~ 2720661 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGGGGCGGCGTTTCCCGGAAAGAGTCCGGAGCCGGTCGAGGGGGACCCGGAAGAGCGGCCGGCGTTCTAGAACGAGCAACATGGCGCCGCCCAGTGAGGCGCGTCTGAAGGAGAGCGGGTATCGCGGCCGATACATGTCTGCGACTATTTAGTGTGTAACCATGAGCCGCGCACGGTTTCTGACGCTGGCGCAGGAGCTCGGCACCCTGGTGCCCAGAGCCAGGGCGGCTGCTCTGAGTGCAGCTGCACACCGAGTTCCCACAGCAGCCTTCCCCAACACAGGAAACGCACGCTACGGCCCGTCGGCGTTGAGATGTTTCCACAGGAGCAGCAGGTTGGCGGAGATGAAACCCACCTGTACGGACGGCGGGCAATCGGGAATTGAGACGGGCAGATCCCTGGCCACCCCTGAAGACCTGTTCGAGCGGTTGGCCCGGGACTCCAGGACCAAGGCCACGTTCAACCGGGTGCTGGACACGTTCGTGAAGCGGGACGTCCGCCGGCGGGGCCACGTGGAGTTCATCTACGCGGCGCTGAGCAAGATGCCGGAGTTCGGCGTGGAGCGGGACCTGTCCGTCTACAACAAGCTGCTGGACGTCTTCCCCAAAGAGGTATACGTTTGcctgttttatttctctctctctcacacagggATCATGCCCAACGTGGAGACCAAAGTCCTCCTCGTCCAGATCTTCGGGCTGAAGGGCCACCCCGTACGCAAATACCAGCGCCTCCTGTACTGGTTCCCACGGTTCAAGAACATCAACCCCTACCCGCTCCCAGAGCAGCTCCCGCAGGACCCCCTGGACCTGGCGCGCCTCAGCCTGGCGCGCATAACCGACAACCTGGACGCCGAGGTCACGGTGTACCAGATGCCCTACAGCGACGTCTCCGACGCGGGAGAAGAAATCTCCCAGCCGCACATCGTAGgcattCAGAGTCCGCAGCAGCGCTCCCTGCTGGCCAGGCACAACCCCAGCCGGCCCGTGTTCGTGGAGGGCCCATTCCCGCTGTGGCTGAGGAAGACCTGCGTGTTTTACTACGTCCTCCGGGCCGACCCCCCGCCGCCCCAGGAACAGGTGGAGGAGCCCCTGGACCCCGAGAGGAGCCTCTACTACCCCCTGGTGCTGGACCTGGACTTGGACCGACACCTGGGGGACGACGACCGCTTCGAGGTGGACGAAGTGGCGGAGGGCCCCGTGTTCGCGATGTGCATGGCGGGCTCCGGGGACCAGGCCACGCTGTTCAAGTGGATCTCCGGCCTCCAGGAAACCAACCCGGTGCTGGGCAGAACCCCCACGGTGTTCCGGCTGGAGTCCGTCCCGCGAGAGATCCAGAGCGCCGCCGAGGCTGCCGTGGAGGAGGAGCACCCCCGCAGCCAGGGCATGAAGCAGTGAGAGCACGGGACCGAGCAGCGCTGGACTCGCATCGCCTGGCTTCTCTCACGGCAGGAGCAGGATGATTTGCCCAGAAGTGTGTTGGCAGCATCACAACGGTCATTTGTGCAGCTTGTCACACCCCCAGTTAAGGggtctgtaaataaaataaccccATCTCAGATCCACACGAGAAAACGGTTTCTGTAGTGCATGTTGTCCGCTGTCCTTGATAACAATTTGGAACTAATCGCCAATAAGTAACGAATAATCTGACGGTTGGCTTTATTTTCTCTGGATTTTCTCCGTATTTCAGGTCCAATCCAGAGAATAATAACTGCCGGCATTTGGAAGTTAAGTCTCCCTCCAAACCTCAAGGACTCTCGTGTCAGCATCTGCATTTCCGCCTCGAGGAATAAACAATGTCTTTACTGTTCA

Function

GO: NA

KEGG:

id description
K04405 ECSIT; evolutionarily conserved signaling intermediate in Toll pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61817 lncRNA upstream 251153 2445185 ~ 2464667 (+) True G49431
TU61672 lncRNA upstream 502327 2212429 ~ 2213493 (+) True G49341
TU61648 lncRNA upstream 507343 2163319 ~ 2208477 (+) True G49321
TU61586 lncRNA upstream 640171 2068057 ~ 2075649 (+) True AMCG00008473
TU61609 lncRNA upstream 805401 1908823 ~ 1910419 (+) True G49294
TU61966 lncRNA downstream 91513 2812174 ~ 2812893 (+) True G49541
TU62010 lncRNA downstream 165170 2885831 ~ 2886138 (+) True G49582
TU62038 lncRNA downstream 189001 2909662 ~ 2910628 (+) True G49598
TU62039 lncRNA downstream 190033 2910694 ~ 2910939 (+) True G49599
TU62082 lncRNA downstream 307317 3027978 ~ 3042595 (+) True G49636
AMCG00008489 mRNA upstream 85621 2616463 ~ 2630199 (+) True AMCG00008489
AMCG00008487 mRNA upstream 199311 2515229 ~ 2516509 (+) True AMCG00008487
AMCG00008483 mRNA upstream 285039 2424395 ~ 2430781 (+) True AMCG00008483
AMCG00008485 mRNA upstream 293811 2420340 ~ 2422009 (+) True AMCG00008485
AMCG00008484 mRNA upstream 313222 2395064 ~ 2402598 (+) True AMCG00008484
AMCG00008499 mRNA downstream 67207 2787868 ~ 2793880 (+) True AMCG00008499
AMCG00008498 mRNA downstream 77879 2798540 ~ 2811299 (+) True AMCG00008498
AMCG00008497 mRNA downstream 94735 2815396 ~ 2823096 (+) True AMCG00008497
AMCG00008505 mRNA downstream 183898 2904559 ~ 2906941 (+) True AMCG00008505
AMCG00008509 mRNA downstream 274280 2994941 ~ 3003560 (+) True AMCG00008509
TU61670 other upstream 504306 2209483 ~ 2211514 (+) True G49340
TU61627 other upstream 572510 2127715 ~ 2143310 (+) True AMCG00008476
TU61588 other upstream 610247 2091961 ~ 2105573 (+) False AMCG00008475
TU61614 other upstream 779318 1930654 ~ 1936502 (+) True G49298
TU61499 other upstream 1391551 1322811 ~ 1324269 (+) True G49208
TU61936 other downstream 45218 2765879 ~ 2770044 (+) True G49523
TU62012 other downstream 166105 2886766 ~ 2888896 (+) True G49583
TU62528 other downstream 1435427 4156088 ~ 4160062 (+) True G49980
TU62530 other downstream 1441397 4162058 ~ 4165483 (+) True G49982
TU62655 other downstream 1841330 4561991 ~ 4572734 (+) True AMCG00008580

Expression Profile