RNA id: AMCG00008494


Basic Information

Item Value
RNA id AMCG00008494
length 693
RNA type mRNA
GC content 0.68
exon number 2
gene id AMCG00008494
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 2709542 ~ 2710591 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATGACTTTGGACACAGAAAGCGCCTCGGAGCTCATGGAAGAACCCGACATTGACGTGGTTGGGGATGGCAACAGGGACGCCAAGAAGCAGCAGCTCTTCTCTTTACCTTTGGTGGTGGAAGCCACAGGCAGTGTGGACGGCGAACGGGAAGCCCAAGCTGCGTCCCCGACGAAGCGCTTCAAACGGCAGCACTTCAGGTTCGGGCTGGTGAAGGAGCCGTGCGAGCCCGGGGCGCTGCCCAGCTTCACCTACGGCACCTACGGCCTGGGAGCGGCCTGCCTGCAGCTGCCGGGTCTGGAGCTGCACCCCGTGGGCTTCCACCCCCGGCCCTCGCACTGCCTGGCCcccggcagcagcagcatcctGCCGGCGCTGTCCACGCTGTTCTCCAGGACCTCTCTGGCGGCCGCTGGCAAGGCGTTCCTCCCTTCTCAGTCTGTCAAACCGGAGTGCGCCCTCCCGGTGCCCCCCTTCCCCTTCGAGAGCCTCGGCAGCTGCCCTGGCCTCGCCTCGGCTCTGGTGCCGGAGTCGCCGGGCGCGCCGTACCTCCCCGGCGCGGTGCTGCATCCCCCGGGCGCCCCGCACCTGCTCAGCCTGCAGCACGACTACCACAAACTGCGCGCCCTGCCCGGCGGTGCCAGCCTGGCCAACAAACTGCTGCAGCACCTGAGCAGCGCCGGCCACTGCTAG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030154 cell differentiation biological_process
GO:0009888 tissue development biological_process
GO:0007399 nervous system development biological_process
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61913 lncRNA downstream 7120 2636915 ~ 2702422 (-) True AMCG00008491
TU61850 lncRNA downstream 272785 2377005 ~ 2436757 (-) True G49462
TU61803 lncRNA downstream 349430 2359860 ~ 2360112 (-) True G49419
TU61798 lncRNA downstream 472681 2236527 ~ 2236861 (-) True G49414
TU61770 lncRNA downstream 633894 2068083 ~ 2075648 (-) True G49393
TU61973 lncRNA upstream 112650 2823241 ~ 2823976 (-) True G49547
TU62048 lncRNA upstream 199071 2909662 ~ 2910628 (-) True G49606
TU62058 lncRNA upstream 264358 2974949 ~ 2975153 (-) True G49614
TU62306 lncRNA upstream 662953 3373544 ~ 3379324 (-) True G49802
TU62310 lncRNA upstream 679612 3390203 ~ 3392090 (-) True G49806
AMCG00008490 mRNA downstream 36107 2668457 ~ 2673435 (-) True AMCG00008490
AMCG00008492 mRNA downstream 51449 2650692 ~ 2658093 (-) True AMCG00008492
AMCG00008491 mRNA downstream 62125 2638424 ~ 2647417 (-) False AMCG00008491
AMCG00008488 mRNA downstream 174181 2489877 ~ 2535361 (-) True AMCG00008488
AMCG00008486 mRNA downstream 264330 2438709 ~ 2445212 (-) True AMCG00008486
AMCG00008496 mRNA upstream 11883 2722474 ~ 2727124 (-) True AMCG00008496
AMCG00008495 mRNA upstream 21296 2731887 ~ 2734504 (-) True AMCG00008495
AMCG00008503 mRNA upstream 100770 2811361 ~ 2814023 (-) True AMCG00008503
AMCG00008501 mRNA upstream 113870 2824461 ~ 2832172 (-) True AMCG00008501
AMCG00008500 mRNA upstream 122128 2832719 ~ 2835316 (-) True AMCG00008500
TU61772 other downstream 624536 2078703 ~ 2085006 (-) True AMCG00008474
TU61724 other downstream 828580 1879621 ~ 1880962 (-) True G49375
TU61698 other downstream 859260 1798845 ~ 1850282 (-) False AMCG00008462
TU61344 other downstream 1768890 931892 ~ 940652 (-) False AMCG00008428
TU61309 other downstream 1861496 841883 ~ 848046 (-) True G49054
TU62046 other upstream 196084 2906675 ~ 2908665 (-) True G49605
TU62371 other upstream 1063992 3774583 ~ 3777354 (-) True AMCG00008547
TU62870 other upstream 3038299 5748890 ~ 5885450 (-) True G50267
TU62882 other upstream 3077159 5787750 ~ 5792584 (-) False AMCG00008608
TU63135 other upstream 4237298 6947889 ~ 7151472 (-) False G50476

Expression Profile