RNA id: AMCG00008495


Basic Information

Item Value
RNA id AMCG00008495
length 591
RNA type mRNA
GC content 0.67
exon number 5
gene id AMCG00008495
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 2731887 ~ 2734504 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGCCTCCACAGTGGTGCGGGCGAGCGTGGGGCTGACTTTGAGAATCGCCCGGGTTAATCCGGCGGGGAGCCTCCCACGCCTGGCCAGGCTGGCCGGGGGCGCACACACCCATCCGGGGGCGGCGGGAGAGGAGCGGACCGGGCGCCTCCCGGGCCCGAAACGGAGCCTCCACGCAACGGCCGGCCTGTCTCACAGCGAGGACGGAGACGGAGACGTGGAGGACGAGCGAGGGGTGGTCAACGTGGTGTACGTGGATCGGTCAGGAAAGCGCATCCCGGTGAAGGCCCGGGTGGGAGACAACGTCCTGTACCTGGCACACAGACACGGCATTGATCTGGAGGGTGCGTGTGAAGCCTCCCTGGCCTGCTCCACGTGTCACGTGTATGTGAGTTCGGAGCACTGCGGTAAGCTGCCGGAGCCGGACGAGAGAGAAGAGGACATGCTGGACCTGGCCCCCCTGCTGCAGGAGAACTCCCGGCTGGGCTGCCAGATCGTCCTCACCCCCGACATGGAGGGCATGGAGCTCACGCTGCCACGCATCACGCGCAACTTCTACGTGGACGGACACGTGCCCAAACCCCACTGA

Function

GO:

id name namespace
GO:0051536 iron-sulfur cluster binding molecular_function

KEGG:

id description
K22071 FDX2; ferredoxin-2, mitochondrial

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61913 lncRNA downstream 29465 2636915 ~ 2702422 (-) True AMCG00008491
TU61850 lncRNA downstream 295130 2377005 ~ 2436757 (-) True G49462
TU61803 lncRNA downstream 371775 2359860 ~ 2360112 (-) True G49419
TU61798 lncRNA downstream 495026 2236527 ~ 2236861 (-) True G49414
TU61771 lncRNA downstream 661015 2069790 ~ 2070872 (-) True G49394
TU61973 lncRNA upstream 88737 2823241 ~ 2823976 (-) True G49547
TU62048 lncRNA upstream 175158 2909662 ~ 2910628 (-) True G49606
TU62058 lncRNA upstream 240445 2974949 ~ 2975153 (-) True G49614
TU62306 lncRNA upstream 639040 3373544 ~ 3379324 (-) True G49802
TU62310 lncRNA upstream 655699 3390203 ~ 3392090 (-) True G49806
AMCG00008496 mRNA downstream 4763 2722474 ~ 2727124 (-) True AMCG00008496
AMCG00008494 mRNA downstream 21296 2709542 ~ 2710591 (-) True AMCG00008494
AMCG00008490 mRNA downstream 58452 2668457 ~ 2673435 (-) True AMCG00008490
AMCG00008492 mRNA downstream 73794 2650692 ~ 2658093 (-) True AMCG00008492
AMCG00008491 mRNA downstream 84470 2638424 ~ 2647417 (-) False AMCG00008491
AMCG00008503 mRNA upstream 76857 2811361 ~ 2814023 (-) True AMCG00008503
AMCG00008501 mRNA upstream 89957 2824461 ~ 2832172 (-) True AMCG00008501
AMCG00008500 mRNA upstream 98215 2832719 ~ 2835316 (-) True AMCG00008500
AMCG00008504 mRNA upstream 104591 2839095 ~ 2845891 (-) True AMCG00008504
AMCG00008502 mRNA upstream 119879 2854383 ~ 2872051 (-) True AMCG00008502
TU61772 other downstream 646881 2078703 ~ 2085006 (-) True AMCG00008474
TU61724 other downstream 850925 1879621 ~ 1880962 (-) True G49375
TU61698 other downstream 881605 1798845 ~ 1850282 (-) False AMCG00008462
TU61344 other downstream 1791235 931892 ~ 940652 (-) False AMCG00008428
TU61309 other downstream 1883841 841883 ~ 848046 (-) True G49054
TU62046 other upstream 172171 2906675 ~ 2908665 (-) True G49605
TU62371 other upstream 1040079 3774583 ~ 3777354 (-) True AMCG00008547
TU62870 other upstream 3014386 5748890 ~ 5885450 (-) True G50267
TU62882 other upstream 3053246 5787750 ~ 5792584 (-) False AMCG00008608
TU63135 other upstream 4213385 6947889 ~ 7151472 (-) False G50476

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00062196 True 1139 mRNA 0.55 5 NC_007117.7 149405 ~ 152955 (+)