RNA id: AMCG00008497


Basic Information

Item Value
RNA id AMCG00008497
length 4653
RNA type mRNA
GC content 0.54
exon number 3
gene id AMCG00008497
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 2815396 ~ 2823096 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTCACggtcaaacaaaataaaaacaccgaAAACAAGGTCCCATTATTGATTCGTTTAATTGTTGATGACTTGGGTGACTCATTAAATAACGTTAGTTTTATTTCTGGGATCACTATGTATAGTCTCCGAACTAATGTGTTAAAGGTAACAAAATAACACAGTTTTGTGTAAACATTTACCAAATTATAACaatgatgtgtatttttttacacaatggTTTTCCCCCACACAAAAGACACATTGCCgtgttcattttaacacaaaattgtgttgtccttgaacaatttaacacattagttctaagagtgtataattgcatattttttaattattatgagaGTTGCCTCCCTTGATTAAAATATCtcgatttaatttaattagttttcagtttgtttttggaaatgccTTGTTTTAACATGACGTATTGAACCCACAACAAGGAAGACGCAATGTATACAACTGGCTCAACAAGTGAATCgtttaatttagtttctacTGGCCTGGAAACCAACGCCAGGTGGATGGATTAATTGCAACCCACTGTTAATTGGCAAGTTCAATGTGTTGGTCGTTTAGCTGGAGCAAGCGCGGAGATCAAGGTGATGTCATCAGTGAAATCATGCAGAAGTATTAAAATATTCCTATTATGTagtaaaacattataaacaaacgAATATGATCTCCTTTCTCCATGTATTCAAAAGTTAGACTTTTTAACAATTTGCAGTAGTTTAGTATACTATTTTGTTCAGTTTCCTATACGCATTGTGTCCCCAGTTTACTTTTGCCTGGAATGCAGATACGGTATCTCCTGACGCCACAAGGTAGCCTGCCTGCCGGTGTCTCTAGGGGCGGGGAGGAGACGGAGGAGACGGAGGTTGGCACTTCATTCCGCCAGTAGGCGACCATCACACCACGACCTGCCAGAAACGCGTGGAGTTCAAGAGACAGTCGCTCCGGACCAATGGACCCACAATAAGTGCCAGACAGCGGAACGGGCTCAAGGGCTGTAAGAAAGATAAAGAAGGAACAAGTCAGCGAAGCTCAAATCAGGCCGAGACAACAACCCCATGGAGAAGAGTTAGAGCCGCTGAAGCGGGACAGCGTGCGTGTGGATCCGACTCCAGCCCAGGTGTGCGGGCCGGGCGCTGCAGtATGATCCCTGTGACCGAGTTCAGGCAGTTCACGACCGATCAGAACCCCCGGCTGCGCGTGCTGAAGCCGTGGTGGGATGTCTTCACCGAATATATCTGCACCGCCATGCTGATGATCGGCGTCTTTGGCTGCACGCTACAGctgacTCAAGACAAGATCGCATGTCTCCCAATCCACCAGTCTGACCCCTACCTGAAAAACACCACCTGCAATCACATCACAGGTCAACACGACCACTCCGGCGCGCCGCACATGAGCGCAGACTCGGGGGTCCAGGAGATGTTCGGCCGGAAGAACAACCTGGACGTCCACCAGTACATCTACGTCAACTACCTCTGCTACGAGAAGGCCCTGCACTGGTATGCCAAGTACTTCCCCTACCTGGTGGTCATCAACTCCATCATCTTCATGATCTGCAGCAGCTTCTGGTTCAAGTTCCCCGGCACCTCCTCCAAGATCGAGCTCTTCATCTCCATCCTGGGCAAGTGCTTCGACTCCCCGTGGACCACGCGGGCGCTGAGCGAGGTGTCCGAGGAGCGCAAGGAGGAGAAGATGGTGGTGTGGCGGAGGGATGTCTTCTCCAAGACCAACTCGCTCACCGACGGGCTCGTCCAGGAGGAGGAGACAGTGGGCCTGCTGCGCTCAGCCTCGACCAAATCCAAGGCCGAGAAGAAGCTGGCCGAACAGCCGCCGGACACCTCCGCGCTGGACAAGAAGGAAGGGGAGCAGGCAAAGGCGCTATTCGAGAAGGTCAAGAAGTTCCGCAGCCACGTGGAGGAGGCTGACATCCTGTATTTCATGTACGTCCTGCAGACGTGCCTCAAGGTCTTCATGGTCATCCTGATCATCATCTATAGCGCTGTGCTGGTGTCGAACATCAAACTGGAGGTGCCCTGCTCTGTGGACGCACAATTCACCGGCTTTGACACCTTCTGCTGCAGCCACACCAAGGCCCACCTCTTCGCCAAGCTGGCCTACTGTTACATCTGCCTGTTGAGCGTCTATGGCTTGGTGTGCTTCTACACCCTGTACTGGCTCGTCCACCGGCCCCTGAAGGAGTACTCCTACGACACCATGCGCCTGGAGACTGGCATCACCGATATCCCCGACTTGAAGAACGACTTCGCCTTCCTGCTGCACCTGAGCGACCAGTACGACGCCCTGTATGCTAAGCGCTTCGCCGTCTTCCTGTCGGAGGTGAGCGAGGGCCGGCTGCGGCAGATGAACATGAACAACGAGTGGACGGCAGAGAAGCTGCGCCAGCGGCTGAGCAGGAATGCGCAAGAGCGGCTGGAGCTGCACCTGCTGATGCTGTCCGGGCTGCCCGACACCGTCTTTGAGATGGCCGAGGTGGAGGTGCTCAAGCTGGAGCTCCTGACCGAGGTCACCATCCCCGGCAGTGTTGCCCAGATGAGCTGCCTACAGGAGCTGTGCCTCGTCCACTGCCCTGCCAAGCTGCAGTTGGCCGCCCTGCACCACCTGCGCTCCAGCCTCAGGGTCCTGCGGCTCACCTTCGACGGGCCGGAGCAGGTGCCCATGTGGATGTACACTCTGCACAGCCTGGAGGAACTGCACCTGACGGGGTCCCTGAGCCATGAGCTCCAGCGCAGCCCCTCCCTGGACACCCTGCGCGAGCTGCGGAGCCTCAAGCTGCTGGTGCTGCGCTGCCGGCTGCCCAAGGTCCCGCACAGTGTGACGGACGTCGGCGCGCACCTGCAGAAGCTGCGCATCTACAACGAGGGCGGCAAGCTGCACTCCTTCAGCAGCCTGAAGAAGATGTCTGCCCTGACGTCACTGGAGCTGGTGGGCTGCGAGCTGGAGCGCATCCCCCACGCTGTCTTCAGTCTGGCCAACCTGCAGGCGCTAGACCTGAAAGACAACCGGCTCACCTCAGCCGAGGAGGTCCTCAGCCTGCAGCACTGCCGGCGCCTCACCACGCTCAAGCTGTGGCACAACGGCATCACCTGCGTGCCCGACCACATCCGCAAGCTGCGCTCCTTGGAGAGTCTGCACCTGTGCTGGAACAAGATCAGCAGCCTGCCCGCCGGCCTGTTCTACTGCGTCAAGCTGCGCCACCTGGACCTCTCCCACaacctcctggccagcctgccgcCCGAGGTGCGCATCCTCCAGAACCTGCAGTTCCTCTCGGCGGCCCACAATGCCCTGGCCTCCCTGCCCGATGAGCTCTTCTCCTGCAGGCGGCTGCAGACCCTGCTGCTTGGCCACAACAGTCTGTCCTCCCTCTCGCCCAAGGTGGCCCAGCTGACCCAGTTGGTGCAGCTGGAGCTGAAGGACAACGGGCTGGAGGCGCTGCCGCCCGAGATCGGGGAGTGCCGGCTGCTGAGGCGCAGCGGCCTCGCAGTGGAGGACACCCTGTTCGACCTCCTGCCCGCCGAGGTCAGAGCGCAGATGAAGGACAGCTGAGCCGCACCGAGGGAAGTCGGTGGGAGGGTGCGGTTATGTGCGGTGGGGCAGAGTCACGAGGGTGAGGTGCTGTTgatgttggttttctttttacagaCTTGTGCACAAGACCCTGATTTGAATCGCTCTCCCCCAGACAGCAGCCAATCAAGAGAGATGGCTGAAATAACGATCTGTAATTGGGGAGTAGCTGCACCGAGCCATTGCTCCTCCAGTTGGCCCATTCTCTCGGTGTGGGTCCCCCCTGCGCTGGCCAGATCAAAAGCTGGGGAGTCCCAGAAGAGGTGTGGATTGAAATAAAGGACAATAACAGTTAAACTAAAAACACTAGAGAAACACCCAAAAGGAGAAGAACATGTTTTAAAcgcatacattttatttattttttataggaCACTTATATACTGATGACCTGCTATTTCTGTGCCTTGAAGAGAAGTGGGTTAAACTGACagtgtttttctcattttatttcctgtttagATGTGATCTAGTGGATGAATTGTGCTAACATTTAGTGAGGCATGGTgagaggggggacagagagggatCACTCTTCTTCAGCACAGCCCGAGTTGGGCTGCCTGCATCTGGGTTGGTTGAGCGCTTATTGAGTTGCACACAGTGTTGATGCAGGGATGCTATAGTCTGTGCCACCAGTGACATCATACCTCTCCAGGAATCAGAAGCCCTGGTATGCAAACACAGCCACGCCGCCAGGGTGGATGAGCTGCGAGTCATCCTGCCTAACTGGTTTGATCAAGGGCTCAGTCCTACTCCCAGCTCAGATCCACACCGCTCTCCTCATCGGTAACCAAGACCAAAGCGGCTCAACAACTCCGGTCAAGCAGCATGTAGGCCAGGGGTGTCAGACCCCAGTCcttggggggccgcagtgtctgttTTTCCTTCCCCCAATAGGAGCTCCCAATTTCATAATGTCGattctttaaataaagattttttttgtagccAATACCTTACGATTTGCTTGACTcacactgaacccacagaaccGTCTGGAGAGAAGAGTTAATTGACCTTTCACAAAACTGTAGTGTAGTGGCGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61966 lncRNA upstream 2503 2812174 ~ 2812893 (+) True G49541
TU61817 lncRNA upstream 350729 2445185 ~ 2464667 (+) True G49431
TU61672 lncRNA upstream 601903 2212429 ~ 2213493 (+) True G49341
TU61648 lncRNA upstream 606919 2163319 ~ 2208477 (+) True G49321
TU61586 lncRNA upstream 739747 2068057 ~ 2075649 (+) True AMCG00008473
TU62010 lncRNA downstream 62735 2885831 ~ 2886138 (+) True G49582
TU62038 lncRNA downstream 86566 2909662 ~ 2910628 (+) True G49598
TU62039 lncRNA downstream 87598 2910694 ~ 2910939 (+) True G49599
TU62082 lncRNA downstream 204882 3027978 ~ 3042595 (+) True G49636
TU62224 lncRNA downstream 533603 3356699 ~ 3359529 (+) True G49738
AMCG00008498 mRNA upstream 4097 2798540 ~ 2811299 (+) True AMCG00008498
AMCG00008499 mRNA upstream 21516 2787868 ~ 2793880 (+) True AMCG00008499
AMCG00008493 mRNA upstream 94735 2715820 ~ 2720661 (+) True AMCG00008493
AMCG00008489 mRNA upstream 185197 2616463 ~ 2630199 (+) True AMCG00008489
AMCG00008487 mRNA upstream 298887 2515229 ~ 2516509 (+) True AMCG00008487
AMCG00008505 mRNA downstream 81463 2904559 ~ 2906941 (+) True AMCG00008505
AMCG00008509 mRNA downstream 171845 2994941 ~ 3003560 (+) True AMCG00008509
AMCG00008510 mRNA downstream 193360 3016456 ~ 3019921 (+) True AMCG00008510
AMCG00008514 mRNA downstream 197499 3020595 ~ 3021066 (+) True AMCG00008514
AMCG00008516 mRNA downstream 264084 3087180 ~ 3102783 (+) True AMCG00008516
TU61936 other upstream 45352 2765879 ~ 2770044 (+) True G49523
TU61670 other upstream 603882 2209483 ~ 2211514 (+) True G49340
TU61627 other upstream 672086 2127715 ~ 2143310 (+) True AMCG00008476
TU61588 other upstream 709823 2091961 ~ 2105573 (+) False AMCG00008475
TU61614 other upstream 878894 1930654 ~ 1936502 (+) True G49298
TU62012 other downstream 63670 2886766 ~ 2888896 (+) True G49583
TU62528 other downstream 1332992 4156088 ~ 4160062 (+) True G49980
TU62530 other downstream 1338962 4162058 ~ 4165483 (+) True G49982
TU62655 other downstream 1738895 4561991 ~ 4572734 (+) True AMCG00008580
TU62810 other downstream 2772927 5596023 ~ 5596799 (+) True G50215

Expression Profile