RNA id: AMCG00008498


Basic Information

Item Value
RNA id AMCG00008498
length 3938
RNA type mRNA
GC content 0.57
exon number 7
gene id AMCG00008498
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 2798540 ~ 2811299 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTATTCTGGCACTGCGATAAGGTTAGTGCAATGCTTAGTCATGGTGAGTTACAGCTTTCTCTCGCCAGCCTTTATTTCTCGGCACACAGGCAGCGATGGAGGAGACGCACACAATCTGCCATAGAGCCATTCTGTCTGAGAGCGGTCAGCGGTGTCACGGCACTGCCAGAGGGAGCTCCCGAGTGACCAACTGACCGGCCAGCAGGCAAGGAGAAGGACAAAAACAGCTGTCTGGAGACGGCCGGACTCTCGGAGCGATTTTGTTAACGGTGCCAAGCTGCTGTGCGCCCTCTGCAAGGCATCCCCCCACCCACTTCATATTAAGCGTGTGGAATTTAGCTCCCCTCCTATATCTacctcaaataaaaaacaaccaccacctGCCTTCCACAGACGTGCAGGAAGACAGGAAAAGGAAGGAGTCCGTCTTAAACAGAATACAACCCCATCGCTCCTCTGACTGCTGCTACAGTAGCCTCTCAAATCACAACGCAACACTTTTAGTTTGGGATCGTGCTTTCCAAACACTTTCCGGGCCTTCTGCCTGTCACCCAGTCTCTcccctgatttatttttttggttccaAACTTCCCGCATTGCCCGGGAAAGACAAAATGGCCAGTTACACATCTAAATAGCTCTCCATTGTgctcccctccccacccccaacatGCTTTGAATCGCATGTTGTTTCCCTGTCAGCTCCTCAGCTGTCGCATTGGCTGAAAAAAGGGAATATCACTGATTTCCACCCCTCGTCAATGGAAAAAATGGCGTCGCGGCCACAGATCCCGAACAAGAGCTGTCCATACATAGGGGCCTTCAGTCATGTCCCTTTTATAATATGTCCCTGATCCCAACTCCAGTTCCCCCGCCGGTTGCAGGCCtacttttacattacattatttgtcatttagcaggtgctcttatccagggctacTTCACTTCTCTTCTTTCCATGCGATACCGAACAAATTAGTGTGAAAGCATATAAATGCTggtgaataaatgaatgagtgACTATATGAATAACGCCCAACTCATTGCTTCGGGGGAGACCAGAACGGTGAAAACCTCAGAACAAAGGAATGCGATCCGACGTCCCTCCTTAGCTGAACACAGTTTTTAGTAGAAGatcaaatcacaaaaacaaattgttctATACGAATAAAATCCCAAACCCAAACCTGCCCCAGATTGTCCCCAGAATCAAAGTAGCCtccaccctcctcctctcccgCCGTGGCGAGCGATGTCTCCGCGGTCGTAGCGCCGGCCACAGCGATGTACGCGGTGGCCACGGAGTGCAAGGCCGAGGTGACGCCCTCGACGCGGAACGGCCACCGCGTCTTCAGCTACACCCTGGAGAGCCACACGGCGCAGGCCTTCGGCATCATGAACGAGCTGCGGCTGGAGCGGCAGCTGTGCGACGTCACCCTGCGGGTCAAGTACAGCGATCTAGAGGCCGTGGAGTTCGTAGCCCACAAGATCGTGTTGGCCTCCTCCTCGCCCGTCTTCCGTGCCATGTTCACCAACGGCCTGAAGGAGTGCGGCATGGAGGTGGTGCCCATCGAGGGGATCCATCCCCGGGTGATGGAGCGGCTGATCGAGTTCTCCTACACGGCCAGCATCTCGGTGGGGGAGAAGTGCGTCATCCACGTGATGAACGGCGCCGTCATGTACCAGATCGACAGCGTGGTCAAGGCCTGCTGCGACTTCCTGGTGCAGCAGCTGGACCCCAGCAATGCCATCGGCATCGCCAGCTTCGCCGAGCAGATCGGCTGCACCGAGCTGCACCAGAAGGCCCGGGAGTACATCTACATGAACTTCAGCCAGgTGGCGACGCAGGAGGAGTTCTTCAACCTATCACACTGCCAGCTCGTGACGCTGATCAGCCGCGACGAGCTGAACGTCCGCTGCGAGTCCGAGGTGTTCCACGCCTGCATCGCCTGGGTCAAGTACGACAGCGAGAACCGCCGTCCCTACATCCAGGCGCTGCTGCGGGCCGTGCGCTGCCACTCTCTGACGCCCCACTtcctgcagctgcagctccagAAGTGCGAGCTGCTCAAGGGCGACTCCCAGTGCAAGGACTACCTGGCGCAGATCTTCCAGGACCTGACACTGCACAAGCCCACCACCGTGCTGTCCTGCCGCACGCCCAAGGTGCCCCAGCTCATCTACACCGCAGGGGGCTACTACCGCCAGTCCCTCAGCTACCTGGAGGCCTACAACCCCTGCACGGGCGCCTGGCTGCGGTTGGCCGACCTGCACATGCCCCGCAGTGGCCTGGCGGGCTGCGTCATCAGCGGGCTGTTCTACGCGGTGGGCGGGCGCAACAACGCCCCCGACGGCAACATGGACTCCAGCGCCCTGGACTGCTACAACCCCATGAACAACCACTGGTGCCCCTGCGCGCCCATGAGCGTGCCACGCAACCGCATCGGCGTGGGCGTCATCGACGGCATGATCTACGCAGATTCCTGGCAGCTGGTGGCACCCATGCTGACTCGGCGGATCGGGGTGGGTGTGGCCGTGATCAACCGGCTGCTGTACGCCGTGGGGGGCTTCGACGGCACCAACCGGCTCAACTCCTCCGAGTGCTACAACCCCGAGAAGGACGAGTGGAGGACCGTGGCGCCCATGAACACGGTGCGCAGCGGAGCTGGCATGTGCGCCCTGGGCAACGCCATCTACGCCATGGGCGGGTACGACGGCACCAACCAGCTCAACACGGTGGAGTGCTACGACATCGAGACGGACTGCTGGGTCTTCGTGGCACCCATGAGGCACCGTCGGAGTGCGCTGGGCGTCACGGCGCACCACGGCAAGATCTACGTGCTGGGGGGTTACGACGGGAACATGTTCCTGGACAGCGTGGAGTGCTACGACCCGGCGACCGGCTGCTGGGACGAGGTGACCAGGATGACCTCGGGCCGCAGCGGGGTGGGCGTGGCCGTCACAATGGAGCCCTGTCCCAAGCAGCTCGCCCAGAGCCAGGGACAGTGCCGGGGTCAGAGCCAGGGACAGTGCCAGGGACAGTGCCAGGGGCAGAGCCAGGGACAGGGACAGTAGAGCACCCCCGCCCATGGGGCAAGAGAGAGCGGGCGTGGGAGAGGGGAGAAAGCCAGCTGCCCCGTTGGAAGCCCGTCCAACACATGAGGTCCTCAAGAACCCCCCCCAGAGTCCCGCAGGGTCTTTTTAAAAACACCGTTGGCCATTTTCCACAAACTGTAAACGCGGCCCTGACTGGAAAAGGGAAGACGGATCGATAAACGAACAAACGACTGCGCGATTGGTTCGGGGGGTGGACGCCTGCGGGGGTCCTTCACAGGGGTTGACGGGAGGCCCAATCCTGTATCCAAAGTGCCACAGTCTCGTCCGACCAGCTGATCAGTACGCCAGTTGAACGAGACTCCCCCGTCGACAGCAACCATCTCCGAGAACGGGAGTGTGACCTGAACCGCCCAGACGAAGCCCGGCGGCACCGCAAAATATACCCCCCCCTCCACGCCCAAAACTGTCTCGATATGAGTTCATTATAGAAGACCCGGTCACTGCTCACACATTTTCTATCAGAAGTTTAAGctacaagaaaagaaaatctttaCAAGGATTCTTTTTGTACCTTGATATTCCGCCACCTTGTACAGAATTCTGAAGTttcatgttttctgttcttgtcgtagtttagtttttttctcttcttctcttcctcGCACTTTGTAAAGGATTGGGTTTGGATATTCAGTGTTTGTGCCGATCGATCGCGCACCGGTTTAATTTAAGGACTTTCGACTTCTCCTCCGAGCGAATGGACTGCGGAGACTGTGAGGGGTCGCCTCGGTTGCTGagattaacatttaaaatagctttgtaaattgtaaagcaaaatgatgatgatgattgcattgtacattaaaatatttgtttgtcta

Function

GO:

id name namespace
GO:0042221 response to chemical biological_process

KEGG:

id description
K10456 KLHL19, KEAP1, INRF2; kelch-like protein 19

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61817 lncRNA upstream 333873 2445185 ~ 2464667 (+) True G49431
TU61672 lncRNA upstream 585047 2212429 ~ 2213493 (+) True G49341
TU61648 lncRNA upstream 590063 2163319 ~ 2208477 (+) True G49321
TU61586 lncRNA upstream 722891 2068057 ~ 2075649 (+) True AMCG00008473
TU61609 lncRNA upstream 888121 1908823 ~ 1910419 (+) True G49294
TU61966 lncRNA downstream 875 2812174 ~ 2812893 (+) True G49541
TU62010 lncRNA downstream 74532 2885831 ~ 2886138 (+) True G49582
TU62038 lncRNA downstream 98363 2909662 ~ 2910628 (+) True G49598
TU62039 lncRNA downstream 99395 2910694 ~ 2910939 (+) True G49599
TU62082 lncRNA downstream 216679 3027978 ~ 3042595 (+) True G49636
AMCG00008499 mRNA upstream 4660 2787868 ~ 2793880 (+) True AMCG00008499
AMCG00008493 mRNA upstream 77879 2715820 ~ 2720661 (+) True AMCG00008493
AMCG00008489 mRNA upstream 168341 2616463 ~ 2630199 (+) True AMCG00008489
AMCG00008487 mRNA upstream 282031 2515229 ~ 2516509 (+) True AMCG00008487
AMCG00008483 mRNA upstream 367759 2424395 ~ 2430781 (+) True AMCG00008483
AMCG00008497 mRNA downstream 4097 2815396 ~ 2823096 (+) True AMCG00008497
AMCG00008505 mRNA downstream 93260 2904559 ~ 2906941 (+) True AMCG00008505
AMCG00008509 mRNA downstream 183642 2994941 ~ 3003560 (+) True AMCG00008509
AMCG00008510 mRNA downstream 205157 3016456 ~ 3019921 (+) True AMCG00008510
AMCG00008514 mRNA downstream 209296 3020595 ~ 3021066 (+) True AMCG00008514
TU61936 other upstream 28496 2765879 ~ 2770044 (+) True G49523
TU61670 other upstream 587026 2209483 ~ 2211514 (+) True G49340
TU61627 other upstream 655230 2127715 ~ 2143310 (+) True AMCG00008476
TU61588 other upstream 692967 2091961 ~ 2105573 (+) False AMCG00008475
TU61614 other upstream 862038 1930654 ~ 1936502 (+) True G49298
TU62012 other downstream 75467 2886766 ~ 2888896 (+) True G49583
TU62528 other downstream 1344789 4156088 ~ 4160062 (+) True G49980
TU62530 other downstream 1350759 4162058 ~ 4165483 (+) True G49982
TU62655 other downstream 1750692 4561991 ~ 4572734 (+) True AMCG00008580
TU62810 other downstream 2784724 5596023 ~ 5596799 (+) True G50215

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00063313 True 2911 mRNA 0.58 6 NC_007117.7 131999 ~ 137149 (-)
grasscarp (Ctenopharyngodon idella) CI01000130_00780796_00795977.mRNA True 2288 mRNA 0.57 6 CI01000130 780494 ~ 796115 (-)